The deacetylases are grouped into different classes according to sequence similarity to yeast prototypes. In mammals, class I members (Rpd3-like) include HDAC1, 2, 3 and 8; class II members are HDAC4, 5, 6, 7, 9 and 10 (similar to Hda1); and class IV is made up of HDAC11 (). Class II is further divided into two subclasses, IIa (HDAC4, 5, 7 and 9) and IIb (HDAC6 and 10). The total number of amino acid residues in each deacetylase is shown to the right of the figure. Many of the deacetylases have isoforms that result from alternative splicing. For simplicity, the number refers to the longest isoform. The deacetylase (DAC) domain is depicted by a rectangle containing a yellow (class I, (a)), clear (class II, (b)), or light green (class IV, (c)) centre flanked by orange shading, and the percentage amino acid sequence identity/similarity to that of Rpd3 (for class I) or Hda1 (class II/IV) is shown. The sequence identity/similarity of Hda1 and HDAC11 to Rpd3 is given in brackets. The C-terminal domains (shaded rectangles) of Hda1 and Clr3 are homologous (identity/similarity, 26/57%). Dark bars represent similar N-terminal domains and C-terminal tails of class IIa histone deacetylases (HDACs). Myocyte enhancer factor 2 (MEF2)-binding motifs are depicted as small green boxes, whereas 14-3-3 binding motifs are indicated by small boxes labelled with the letter “S” (for serine). SE14, Ser-Glu-containing tetradecapeptide repeats; ZnF, ubiquitin-binding zinc finger.