CFP/YFP/HcRed-3X-A Fluorescence Filter Set – Fluorophores

 
Table of fluorophores that may be used with the BrightLine® CFP/YFP/HcRed-3X-A filter set: Note that results may vary depending upon instrumentation and conditions.
 
Cyan Fluorophore
 Peak Excitation
Wavelength* (nm)
Peak Emission
Wavelength* (nm)
7-hydroxy-4-methylcoumarin
360
449
 ABQ
344
445
 ACMA (9-amino-6-chloro-2-methoxyacridine)
421
473
 Acridine
362
462
 Acriflavin Feulgen SITSA
390
460
 AMC, AMCA-S
345
445
 AmCyan
454
488
 Anthrocyl Stearate
370
446
 Astrazon Yellow 7 GLL
450
480
 Atabrine
436
490
 Beta Lactamase
409
450
 BFP (Blue Fluorescent Protein)
382
448
 Bisbenzimide (Hoechst)
360
461
 Blancophor FFG
390
470
 BOBO-1, BO-PRO-1
462
481
 Catecholamine
410
470
 CFP (Cyan Fluorescent Protein)
434
477
 Chromomycin A
436
470
 Coelenterazine Ca2+ Dye, bioluminescence
429
465
 Coumarin
360
449
 Coumarin Phalloidin
387
470
 CPM Methylcoumarin
384
469
 Dabcyl
453
453
 DAPI
359
461
 EBFP
383
440
 ECFP
434
477
 Genacryl Brilliant Yellow 10GF
430
485
 Genacryl Yellow 5GF
430
475
 Gloxalic Acid
405
460
 Hoechst 33258
345
461
 Hoechst 33342
343
483
 HPTS
355
465
 Laurodan
355
460
 Leucophor SF, WS
370
430
 Marina Blue
365
460
 Mitramycin
450
470
 Monochlorobimane
380
461
 Pacific Blue™
405
455
 POPO-1
433
457
 PO-PRO-1
435
455
 Sevron Yellow L
430
490
 sgBFP™
387
450
 SITS (Primuline)
410
450
 SITS (Stilbene Isothiosulphonic Acid)
365
460
 SpectrumAqua
433
480
 SYTO 41
430
454
 SYTO 42
433
460
 SYTO 43
436
467
 SYTO 44
446
471
 SYTO Blue Fluorescent Nucleic Acid Stains 40, 41, 42, 43
428
454
 SYTO Blue Fluorescent Nucleic Acid Stain 44
446
471
 SYTO Blue Fluorescent Nucleic Acid Stain 45
452
484
 SYTOX Blue
445
470
 Thioflavin TCN
350
460
 Thiozole Orange
453
480
 Y66W
436
485
 
Yellow Fluorophore
Peak Excitation
Wavelength* (nm)
Peak Emission
Wavelength* (nm)
 6-Carboxyrhodamine 6G
518
543
 BODIPY FL-Br2
531
545
 Calcium Green-1
506
531
 Calcium Green-2 (including Ca2+)
506
536
 Calcium Green-5N (including Ca2+)
506
532
 CI-NERF, CL-NERF
509
540
 DCFH (Dichlorodihydrofluorescein Diacetate)
505
535
 DHR (Dihydrorhodamine 123)
505
534
 DM-NERF
500
540
 Eosin
525
546
 Fluo-3
506
526
 JO-JO-1, JO-PRO-1
530
545
 Magnesium Green
506
531
 mHoneydew
478
561
 Rhodamine 123
507
529
 Rhodamine 6G
518
543
 Rhodamine Green
504
532
 SpectrumGreen
497
538
 SYTO Green Fluorescent Nucleic Acid Stains 11, 14, 15, 20, 22, 25
515
543
 SYTO Green Fluorescent Nucleic Acid Stains 80, 81, 82, 83
537
552
 TET
521
536
 TOTO-1, TO-PRO-1
509
533
 YFP
513
527
 
Red Fluorophore
Peak Excitation
Wavelength* (nm)
Peak Emission
Wavelength* (nm)
5-Carboxynapthofluorescein (pH 10)
555
615
 5-ROX (carboxy-X-rhodamine)
578
605
 7-AAD
546
647
 7-Aminoactinomycin D (7-AAD)
546
647
 Acid Fuchsin
540
630
 Acridine Orange + RNA
460
650
 Acridine Red
528
620
 Alexa 568
577
603
 Alexa 594
594
618
 Alexa 633
632
649
 Alexa Fluor 568™
577
603
 Alexa Fluor 594™
590
617
 Alexa Fluor 633™
632
650
 Bodipy 630
625
642
 Bodipy 630/650-X
625
642
 Bodipy TR
589
617
 Bodipy TR ATP
591
620
 Bodipy TR-X dye
589
617
 Bodipy TR-X SE
588
616
 Calcein/Ethidium Homodimer
528
617
 Calcium Crimson™ Indicator
590
615
 Calcium Crimson™
588
611
 Chlorophyll
480
650
 Cy3.5™
580
591
 DDAO
463
607
 Di-8-ANEPPS (non-ratio)
488
605
 Di-8-ANEPPS, Di-4-ANEPPS
468
635
 Ethidium Bromide
523
595
 Ethidium Bromide §
518
605
 Ethidium Homodimer-1 (EthD-1)
528
617
 Feulgen (Pararosaniline)
570
625
 Flazo Orange
452
612
 FM 4-46
515
640
 HcRed
590
614
 LDS 751 (RNA)
590
607
 LightCycler 640
625
640
 Malachite Green
628
650
 MitoTracker™ Red
578
599
 mRFPCherry
587
610
 Nile Red
549
628
 Pararosaniline (Feulgen)
570
625
 PE-Texas Red (Red 613)
488
613
 PhotoResist
365
610
 Pontochrome Blue Black
545
605
 Propidium Iodide (PI)
536
617
 Pyronine B
565
605
 Red 613
565
613
 Red 613 (PE-Texas Red)
488
613
 RH 414
500
635
 Rhodamine B
540
625
 Rhodamine B extra
550
605
 ROX
585
605
 SNARF (carboxy) 514 Excitation pH 9
576
640
 SpectrumRed
587
612
 SYTO 17
621
634
 SYTO 59
622
645
 SYTO 61
628
645
 SYTO 64
599
619
 SYTO Red Fluorescent Nucleic Acid Stains 17, 59, 61, 64 §
615
632
 Texas Red®
595
615
 Texas Red-X® Conjugate
595
615
 Thiazine Red R
596
615
 WW 781
605
639
 X-Rhodamine
580
605
 YO-PRO-3
613
629
 YOYO-3
612
631
 YOYO-3, YO-PRO-3 §
612
631
 
* These are typical wavelengths to be used for guidance purposes only. Actual peak wavelengths may vary for different applications.