Curated Data

Literature Curated Data

Information curated or otherwise assembled by the SGD staff.

	Name	Description	README
	biochemical_pathways.tab	Biochemical pathway data in SGD
	functional_complementation.tab	Functional complementation between yeast and human genes
	gene_association.sgd.gz	Gene Ontology (GO) annotations for yeast genes
	gene_literature.tab	Literature Guide information for references in SGD
	genetic_loci.tab	List of genetic loci with associated information
	go_protein_complex_slim.tab	Mapping of gene products to Macromolecular Complex GO-Slim terms
	go_slim_mapping.tab	Mapping of gene products to GO-Slim terms
	go_terms.tab	GO terms and their definitions
	interaction_data.tab	Interaction data incorporated into SGD from BioGRID
	phenotype_data.tab	Curated phenotype data in SGD
	yeastcyc15_201401.tar.gz	Files to install Yeast Biochemical Pathways using Pathway Tools software
	archive	Previous versions of Literature Curated Data files

Chromosomal Features

Information about S. cerevisiae chromosomal features annotated in SGD.

	Name	Description	README
	SGD_CDS_xref.txt	SGD cross references for CDS entries in GenBank/EMBL/DDBJ
	SGD_features.tab	Chromosomal features, coordinates, gene descriptions.
	SGD_ncRNA_xref.txt	SGD cross references for ncRNA entries in GenBank/EMBL/DDBJ
	chromosome_length.tab	Lengths of the chromosomes, with RefSeq identifiers
	clone.tab	Yeast clones from WashU in St. Louis and the ATCC
	dbxref.tab	Mappings between SGD and external identifiers
	deleted_merged_features.tab	List of deleted or merged chromosomal features
	genetic_map.tab	Genetic two-point data submitted to SGD
	ohnolog_YGOB.tab	Paralog data from the Yeast Gene Order Browser
	saccharomyces_cerevisiae.gff	Genomic sequence features, coordinates and annotations. Used to load GBrowse.
	scerevisiae_2-micron.gff	2-micron plasmid sequence features, coordinates and annotations. Used to load GBrowse.
	scerevisiae_clonedata.gff	Yeast clones from WashU in St. Louis and the ATCC, in Generic Feature Format Version 3 (gff3)
	archive	Previous versions of Chromosomal Features files

Calculated Protein Information

Information about S. cerevisiae proteins and hypothetical peptides.

	Name	Description	README
	domains.tab	InterProScan results
	protein_properties.tab	Basic protein information for each ORF in SGD
	hypothetical_peptides/	All possible peptides of 20 amino acids or greater
	archive of protein_properties	Previous versions of protein_properties data files
	archive of hypothetical_peptides	Previous versions of hypothetical_peptides data files