BIOE 244: Advanced Frameworks and Approaches for Engineering Integrated Genetic Systems
Concepts and techniques for the design and implementation of engineered genetic systems. Topics covered include the quantitative exploration of tools that support (a) molecular component engineering, (b) abstraction and composition of functional genetic devices, (c) use of control and dynamical systems theory in device and systems design, (d) treatment of molecular "noise", (e) integration of DNAencoded programs within cellular chassis, (f) designing for evolution, and (g) the use of standards in measurement, genetic layout architecture, and data exchange. Prerequisites:
CME104,
CME106,
CHEM 33,
BIO41,
BIO42,
BIOE41,
BIOE42, and
BIOE44 (or equivalents), or permission of the instructors.
Terms: Spr

Units: 4

Grading: Letter or Credit/No Credit
Instructors:
Endy, A. (PI)
;
Smolke, C. (PI)
CME 104: Linear Algebra and Partial Differential Equations for Engineers (ENGR 155B)
Linear algebra: matrix operations, systems of algebraic equations, Gaussian elimination, undetermined and overdetermined systems, coupled systems of ordinary differential equations, eigensystem analysis, normal modes. Fourier series with applications, partial differential equations arising in science and engineering, analytical solutions of partial differential equations. Numerical methods for solution of partial differential equations: iterative techniques, stability and convergence, time advancement, implicit methods, von Neumann stability analysis. Examples and applications from various engineering fields. Prerequisite:
CME 102/
ENGR 155A.
Terms: Spr

Units: 5

UG Reqs: GER:DBMath, WAYFR

Grading: Letter or Credit/No Credit
Instructors:
Khayms, V. (PI)
;
shirian, y. (TA)
CME 104A: Linear Algebra and Partial Differential Equations for Engineers, ACE
Students attend
CME104/ENGR155B lectures with additional recitation sessions; two to four hours per week, emphasizing engineering mathematical applications and collaboration methods. Prerequisite: students must be enrolled in the regular section (
CME102) prior to submittingapplication at:
http://soe.stanford.edu/current_students/edp/programs/ace.html
Terms: Spr

Units: 6

UG Reqs: GER:DBMath, WAYFR

Grading: Letter or Credit/No Credit
Instructors:
Khayms, V. (PI)
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