Education & Certifications

  • M.Sc., University of Oxford (2010)
  • BSFS, Georgetown University (2009)

Stanford Advisors

Lab Affiliations

All Publications

  • Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata SCIENCE Raissig, M. T., Matos, J. L., Gil, M. X., Kornfeld, A., Bettadapur, A., Abrash, E., Allison, H. R., Badgley, G., Vogel, J. P., Berry, J. A., Bergmann, D. C. 2017; 355 (6330): 1215-1218


    Plants optimize carbon assimilation while limiting water loss by adjusting stomatal aperture. In grasses, a developmental innovation-the addition of subsidiary cells (SCs) flanking two dumbbell-shaped guard cells (GCs)-is linked to improved stomatal physiology. Here, we identify a transcription factor necessary and sufficient for SC formation in the wheat relative Brachypodium distachyon. Unexpectedly, the transcription factor is an ortholog of the stomatal regulator AtMUTE, which defines GC precursor fate in Arabidopsis The novel role of BdMUTE in specifying lateral SCs appears linked to its acquisition of cell-to-cell mobility in Brachypodium Physiological analyses on SC-less plants experimentally support classic hypotheses that SCs permit greater stomatal responsiveness and larger range of pore apertures. Manipulation of SC formation and function in crops, therefore, may be an effective approach to enhance plant performance.

    View details for DOI 10.1126/science.aal3254

    View details for Web of Science ID 000396351200046

    View details for PubMedID 28302860

  • Canopy near-infrared reflectance and terrestrial photosynthesis. Science advances Badgley, G., Field, C. B., Berry, J. A. 2017; 3 (3)


    Global estimates of terrestrial gross primary production (GPP) remain highly uncertain, despite decades of satellite measurements and intensive in situ monitoring. We report a new approach for quantifying the near-infrared reflectance of terrestrial vegetation (NIRV). NIRV provides a foundation for a new approach to estimate GPP that consistently untangles the confounding effects of background brightness, leaf area, and the distribution of photosynthetic capacity with depth in canopies using existing moderate spatial and spectral resolution satellite sensors. NIRV is strongly correlated with solar-induced chlorophyll fluorescence, a direct index of photons intercepted by chlorophyll, and with site-level and globally gridded estimates of GPP. NIRV makes it possible to use existing and future reflectance data as a starting point for accurately estimating GPP.

    View details for DOI 10.1126/sciadv.1602244

    View details for PubMedID 28345046

  • Canopy near-infrared reflectance and terrestrial photosynthesis Science Advances Badgley, G., Field, C. B., Berry, J. A. 2017

    View details for DOI 10.1126/sciadv.1602244

  • Improving the monitoring of crop productivity using spaceborne solar-induced fluorescence. Global change biology Guan, K., Berry, J. A., Zhang, Y., Joiner, J., Guanter, L., Badgley, G., Lobell, D. B. 2016; 22 (2): 716-726


    Large-scale monitoring of crop growth and yield has important value for forecasting food production and prices and ensuring regional food security. A newly emerging satellite retrieval, solar-induced fluorescence (SIF) of chlorophyll, provides for the first time a direct measurement related to plant photosynthetic activity (i.e. electron transport rate). Here, we provide a framework to link SIF retrievals and crop yield, accounting for stoichiometry, photosynthetic pathways, and respiration losses. We apply this framework to estimate United States crop productivity for 2007-2012, where we use the spaceborne SIF retrievals from the Global Ozone Monitoring Experiment-2 satellite, benchmarked with county-level crop yield statistics, and compare it with various traditional crop monitoring approaches. We find that a SIF-based approach accounting for photosynthetic pathways (i.e. C3 and C4 crops) provides the best measure of crop productivity among these approaches, despite the fact that SIF sensors are not yet optimized for terrestrial applications. We further show that SIF provides the ability to infer the impacts of environmental stresses on autotrophic respiration and carbon-use-efficiency, with a substantial sensitivity of both to high temperatures. These results indicate new opportunities for improved mechanistic understanding of crop yield responses to climate variability and change.

    View details for DOI 10.1111/gcb.13136

    View details for PubMedID 26490834

  • On Uncertainty in Global Terrestrial Evapotranspiration Estimates from Choice of Input Forcing Datasets JOURNAL OF HYDROMETEOROLOGY Badgley, G., Fisher, J. B., Jimenez, C., Tu, K. P., Vinukollu, R. 2015; 16 (4): 1449-1455
  • Forest productivity and water stress in Amazonia: observations from GOSAT chlorophyll fluorescence PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES Lee, J., Frankenberg, C., van der Tol, C., Berry, J. A., Guanter, L., Boyce, C. K., Fisher, J. B., Morrow, E., Worden, J. R., Asefi, S., Badgley, G., Saatchi, S. 2013; 280 (1761)


    It is unclear to what extent seasonal water stress impacts on plant productivity over Amazonia. Using new Greenhouse gases Observing SATellite (GOSAT) satellite measurements of sun-induced chlorophyll fluorescence, we show that midday fluorescence varies with water availability, both of which decrease in the dry season over Amazonian regions with substantial dry season length, suggesting a parallel decrease in gross primary production (GPP). Using additional SeaWinds Scatterometer onboard QuikSCAT satellite measurements of canopy water content, we found a concomitant decrease in daily storage of canopy water content within branches and leaves during the dry season, supporting our conclusion. A large part (r(2) = 0.75) of the variance in observed monthly midday fluorescence from GOSAT is explained by water stress over moderately stressed evergreen forests over Amazonia, which is reproduced by model simulations that include a full physiological representation of photosynthesis and fluorescence. The strong relationship between GOSAT and model fluorescence (r(2) = 0.79) was obtained using a fixed leaf area index, indicating that GPP changes are more related to environmental conditions than chlorophyll contents. When the dry season extended to drought in 2010 over Amazonia, midday basin-wide GPP was reduced by 15 per cent compared with 2009.

    View details for DOI 10.1098/rspb.2013.0171

    View details for Web of Science ID 000318760500001

    View details for PubMedID 23760636

    View details for PubMedCentralID PMC3652436

  • Global nutrient limitation in terrestrial vegetation GLOBAL BIOGEOCHEMICAL CYCLES Fisher, J. B., Badgley, G., Blyth, E. 2012; 26
  • New global observations of the terrestrial carbon cycle from GOSAT: Patterns of plant fluorescence with gross primary productivity GEOPHYSICAL RESEARCH LETTERS Frankenberg, C., Fisher, J. B., Worden, J., Badgley, G., Saatchi, S. S., Lee, J., Toon, G. C., Butz, A., Jung, M., Kuze, A., Yokota, T. 2011; 38