Next Generation Sequencing

Cancer Systems Biology Workshop

Friday, May 30, 2014 8:30am - 4:00pm, Munzer Auditorium

This workshop will provide an overview of NGS data acquisition and processing. No previous exposure to NGS studies required. Open and free to graduate students, postdoctoral fellows, and faculty.

Course director: Andrew Gentles, Ph.D.
For information, contact Fuad Nijim or Melissa Ellen Ko

Register Now at:

HTTP://CANCERBIO.STANFORD.EDU.NGS

Program

8:30AM - 9:00AM	Registration	Slides from year
9:00AM - 9:45AM	Introduction – Overview of Next Generation Sequencing and Applications Hanlee Ji, Stanford Genome Technology Center	2014
9:45AM - 10:30AM	Processing and Alignment of NGS Data Ben Passarelli, Director of Computing Quake Lab Single Cell Sequencing Core	2014
10:30AM - 10:45AM	Break
10:45AM - 11:30AM	Variant Calling and Structural Variants from Exomes/WGS Ramesh Nair, Stanford CCSB	2014
11:30AM - 12:15PM	RNA-seq – Expression Profiling and Fusion Genes Julia Salzman Assistant Professor, Biochemistry	2014
12:15PM - 1:30PM	Break
1:30PM - 2:30PM	Applying Genomics in the Cloud at Scale Andrew Carroll, DNAnexus	xxxxx
2:30PM - 3:15PM	Examples of NGS Sequencing in Cancer Michael Green, Stanford CCSB	2013
3:15PM - 4:00PM	Group Discussion & Questions Andrew Gentles, Stanford CCSB

Sponsored by the Stanford Center for Cancer Systems Biology and the Cancer Biology Program.