Publications – Dr. Nolan
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Krutzik PO, Trejo A, Schulz KR, Nolan GP. (2011) Phospho flow cytometry methods for the analysis of kinase signaling in cell lines and primary human blood samples. Methods Mol Biol. 2011;699:179-202. PMCID: PMC3166218.
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Krutzik PO, Clutter MR, Trejo A, Nolan GP . (2011) Fluorescent cell barcoding for multiplex flow cytometry. Curr Protoc Cytom. 2011 Jan;Chapter 6:Unit 6.31. PMCID: PMC3036011.
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Krutzik PO, Trejo A, Schulz KR, Nolan GP., (2011) Phospho flow cytometry methods for the analysis of kinase signaling in cell lines and primary human blood samples. Methods Mol Biol. 2011;699:179-202. PMID: 21116984. PMC in Process.
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Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP . (2011) Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology. Nat Rev Genet. 2011 Mar;12(3):224. Epub 2011 Feb 8. PMCID: PMC3273989.
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Kenneth D. Gibbs, Jr., Penney M. Gilbert, Karen Sachs, Feifei Zhao, Helen M. Blau, Irving L. Weissman, Nolan GP, and Ravindra Majeti. (2011) Single-cell phospho-specific flow cytometric analysis demonstrates biochemical and functional heterogeneity in human hematopoietic stem and progenitor compartments. Blood. 2011 Apr 21;117(16):4226-33. Epub 2011 Feb 28. PMCID: PMC3087474.
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Bendall SC, Simonds EF, Qiu P, Amir el-AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, Nolan GP. (2011) Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science. 2011 May 6;332(6030):687-96. PMCID: PMC3273988.
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Thomas C, Moraga I, Levin D, Krutzik PO, Podoplelova Y, Trejo A, Lee C, Yarden G, Vleck SE, Glenn JS, Nolan GP, Piehler J, Schreiber G, Garcia KC. (2011) Structural linkage between ligand discrimination and receptor activation by type I interferons. Cell. 2011 Aug 19;146(4):621-32. PMCID: PMC3166218.
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Knijnenburg TA, Roda O, Wan Y, Nolan GP, Aitchison JD, Shmulevich I. (2011) A regression model approach to enable cell morphology correction in high-throughput flow cytometry. Mol Syst Biol. 2011 Sep 27;7:531. PMCID: PMC3202802.
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Qiu P, Simonds EF, Bendall SC, Gibbs KD Jr, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. (2011) Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nat Biotechnol. 2011 Oct 2;29(10):886-91. PMCID: PMC3196363.
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Palazzo AL, Evensen E, Huang YW, Cesano A, Nolan GP, Fantl WJ. (2011) Association of reactive oxygen species-mediated signal transduction with in vitro apoptosis sensitivity in chronic lymphocytic leukemia B cells. PLoS One. 2011;6(10):e24592. Epub 2011 Oct 10. PMCID: PMC3189964.
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Heffner GC, Clutter MR, Nolan GP, Weissman IL. (2011) Novel hematopoietic progenitor populations revealed by direct assessment of GATA1 protein expression and cMPL signaling events. Stem Cells. 2011 Nov;29(11):1774-82. PMC in Process
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Nolan GP. (2011) Flow cytometry in the post fluorescence era. Best Pract Res Clin Haematol. 2011 Dec;24(4):505-8. PMC in Process.
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Zhang B, Ng D, Jones C, Oh ST, Nolan GP, Salehi S, Wong W, Zehnder JL, Gotlib J. (2011) A novel splice donor mutation in the thrombopoietin gene leads to exon 2 skipping in a Filipino family with hereditary thrombocythemia. Blood. 2011 Dec 22;118(26):6988-90. PMC in Process.
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Newell EW, Sigal N, Bendall SC, Nolan GP, Davis MM. (2012) Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes. Immunity. 2012 Jan 27;36(1):142-52. PMID: 22265676. PMC in Process.
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Schulz KR, Danna EA, Krutzik PO, Nolan GP. (2012) Single-cell phospho-protein analysis by flow cytometry. Curr Protoc Immunol. 2012 Feb;Chapter 8:Unit 8.17.1-20. PMID: 22314834. PMC in Process.
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Gibbs KD Jr, Jager A, Crespo O, Goltsev Y, Trejo A, Richard CE, Nolan GP. (2012) Decoupling of tumor-initiating activity from stable immunophenotype in HoxA9-Meis1-driven AML. Cell Stem Cell. 2012 Feb 3;10(2):210-7. Erratum in: Cell Stem Cell. 2012 Apr 6;10(4):480. PMID: 22305570. PMCID: PMC3273989.
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Bendall SC, Nolan GP, Roederer M, Chattopadhyay PK. (2012) A deep profiler's guide to cytometry. Trends Immunol. 2012 Apr 2. [Epub ahead of print] PMID: 22476049. NIHMS363002.
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Fienberg HG, Simonds EF, Fantl WJ, Nolan GP, Bodenmiller B. (2012) A platinum-based covalent viability reagent for single-cell mass cytometry. Cytometry A. 2012 Jun;81(6):467-75. doi: 10.1002/cyto.a.22067. Epub 2012 May 10. PMID: 22577098. PMC in Process.
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Behbehani GK, Bendall SC, Clutter MR, Fantl WJ, Nolan GP. (2012) Single-cell mass cytometry adapted to measurements of the cell cycle. Cytometry A. 2012 Jun 12. doi:0.1002/cyto.a.22075. [Epub ahead of print] PMID: 22693166. PMC in Process.
- Bendall SC, Nolan GP. (2012) From single cells to deep phenotypes in cancer. Nat Biotechnol. 2012 Jul 10;30(7):639-647. doi: 10.1038/nbt.283. [Epub ahead of print] PMID: 27781693.
- Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner R, Sheode K, Meng TH, Plevritis SK, Nolan GP. (2012) CytoSPADE: High-Performance Analysis and Visualization of High-Dimensional Cytometry Data. Bioinformatics. 2012 Jul 10. [Epub ahead of print] PMID: 22782546.
- Kinoshita SM, Krutzik PO, Nolan GP. (2012) COP9 Signalosome Component JAB1/CSN5 Is Necessary for T Cell Signaling through LFA-1 and HIV-1 Replication. PLoS One. 2012;7(7):e41725. Epub 2012 Jul 24. PMID: 22911848.
- Bodenmiller B, Zunder ER, Finck R, Chen TJ, Savig ES, Bruggner RV, Simonds EF, Bendall SC, Sachs K, Krutzik PO, Nolan GP. (2012) Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nat Biotechnol. 2012 Aug 19; doi: 10.1038/nbt.2317. [Epub ahead of print]. PMID: 22902532.
Please Note: The complete Nolan Lab publication list can be found here.
