Image Analysis
Available Sotwares
The CSIF provides several several software, such as Imaris or Volocity,for image analysis.
We also provide expertise in assembling individual methods into complete analysis/processing pipelines for specific projects using Python/SciPy and we can write personalized Macro for ImageJ/Fiji.
Contact Cedric Espenel (espenel@stanford.edu) for more information
Imaris (Bitplane) 3D Image Analysis Software
Bitplane Imaris (http://www.bitplane.com/imaris/imaris) is ideal for visualization and analysis of 3D data sets as well as rendering animations.
RESERVE THIS WORKSTATION
LOCATION OF THE WORKSTATION: Shriram Center, Room B023
Volocity (PerkinElemer) 3D Image Analysis Software
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LOCATION OF THE WORKSTATION: Beckman Center, Room B050A
SVI Huygens 3D Image Analysis Software
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LOCATION OF THE WORKSTATION: Beckman Center, Room B050
SoftWoRx and Monet (OMX/Delta Vision)
- Deconvolution
- Structured Illumination Microscopy (SIM)
- Localization super-res microscopy analysis (STORM)
RESERVE THIS WORKSTATION
LOCATION OF THE WORKSTATION: Beckman Center, Room B050A
Also Available:
MATLAB
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LOCATION OF THE WORKSTATION: Shriram Center, Room B023
ZENPRO
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LOCATION OF THE WORKSTATION: Shriram Center, Room B023
PHOTOSHOP
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LOCATION OF THE WORKSTATION: Beckman Center, Room B050A
FIJI
Download ImageJ and install it.
For use in your own lab, we recommend the use of Fiji, a free software for microscope images. Fiji is just ImageJ pre-packaged with Bio-Formats and other plugins. It also checks for updates automatically.
MICROVOLUTION Deconvolution Software
Real-time GPU-based 3D Deconvolution
For more information relating to Microvolution, please see: http://www.microvolution.com/technology
RESERVE THIS WORKSTATION
LOCATION OF THE WORKSTATION: Shriram Center, Room B023
