Covid News: U.S. to Tighten Testing for Travelers Amid Omicron Worries

The U.S. will require air travelers to provide a negative test within 24 hours of their departure. A judge blocked a vaccine mandate for U.S. health workers.

International fliers scramble, again, ahead of stricter U.S. rules.

ImageThe United States, which reopened to vaccinated international air travelers in November, is considering tightening testing requirements because of the Omicron variant.
Credit...Bryan Anselm for The New York Times

Travelers reacted with dismay and confusion on Wednesday after the Centers for Disease Control and Prevention said that it plans to toughen coronavirus testing requirements and screening of international fliers bound for the United States because of concern about the Omicron variant.

The agency is considering requiring travelers to provide a negative result from a test taken within 24 hours before departure, among other steps, a spokesman said Tuesday night.

Though the C.D.C. has yet to officially announce any changes, the prospect of them sent travelers searching for updates, booking pre-emptive tests where they could, and scouring airline websites for reservation changes, as the pandemic threatened to upend another December travel season.

“It’s a shame, because travel just opened up again,” said Giritharan Sripathy, who was scheduled to fly to New York from London on Thursday. Mr. Sripathy, who had already taken a P.C.R. test three days before his flight, as required, said he had scheduled a new rapid test for Wednesday as a precaution, “in case they change the rules tomorrow.”

Mr. Sripathy, a Singaporean film producer, said he was concerned that the United States might close off entry to people who are not American citizens or permanent residents. Last year, restrictions like that kept him from returning to the United States, where he works, from a holiday in Singapore for eight months.

“I don’t want a repeat of that,” he said.

The plans to tighten testing requirements reflect growing concern about Omicron, a highly mutated form of the virus that was first documented by researchers in southern Africa and has since been detected in more than a dozen countries around the world, including Britain. Experts say it may be weeks before they will know enough about it to assess how readily it spreads or whether it can evade existing vaccines. In the meantime, countries around the world have imposed travel restrictions, and stock markets have tumbled.

The C.D.C. spokesman, Jason McDonald, said that requiring a negative test within a day of departure, instead of three days, would strengthen the United States’ “already robust protocols” for international travelers, including a requirement that they be fully vaccinated. It was unclear whether the new 24-hour rule would require a particular type of rapid test.

President Biden has said he would announce plans on Thursday for stepping up the fight against the pandemic. It was not clear whether his announcement would include the tighter testing requirements for international travelers, which were first reported by The Washington Post. Mr. McDonald offered no timeline for the C.D.C.’s action.

Mr. McDonald said the C.D.C. continues to recommend that all travelers get a coronavirus test three to five days after arrival in the United States. Unvaccinated travelers should self-isolate and quarantine for seven days after arrival, even if they test negative, the agency says.

Natalie Quillian, the deputy coordinator for the Covid response at the White House, said in an interview on Monday that the administration was “assessing all of our tests to make sure they’re effective in picking up” the Omicron variant, and would remove from the accepted list any tests that were not.

Some travelers said a 24-hour testing rule could make visiting the United States difficult. Paula Tolton, 23, a student in Taipei, Taiwan, who plans to visit relatives in Florida in January, said that she found even the current 72-hour rule nerve-racking because of delays in test processing.

“I’ve had that stress before, when a P.C.R. test didn’t come back when I was supposed to fly here in April,” she said. “I was freaking out.”

Carlos Valencia, a dual Spanish and American citizen whose Seville-based company runs a study-abroad program for American students, said he would put a planned January trip to return to the United States on hold until “there is at least some clarity about whether the new rules make a trip feasible.”

He said shifting rules had driven students in his program “completely crazy” and hampered his business, especially “when you know that variants are going to keep coming.”

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An F.D.A. panel endorses Merck’s Covid pill for high-risk adults.

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Credit...EPA, via Shutterstock

A federal advisory committee on Tuesday voted to recommend that the government for the first time authorize the use of an antiviral pill to combat the worst effects of Covid-19.

The advisory committee, in a surprisingly narrow 13-to-10 vote, endorsed the pill from Merck, while public health officials worldwide raced to buttress their defenses against the newly emerging Omicron variant of the coronavirus.

The Merck treatment, known as molnupiravir, has been shown to modestly reduce the risk of hospitalization and death from Covid. The pill could be authorized for use in the United States within days and available to patients within weeks.

In the coming weeks, the F.D.A. may also authorize a similar pill from Pfizer that appears to be significantly more effective than Merck’s. Together, the arrival of the two easy-to-use treatments could provide a cushion against a resurgent virus.

The F.D.A. advisory panel, a group of experts on antimicrobial drugs, recommended that Merck’s treatment be authorized for people with Covid who are at high risk of becoming severely ill. That would most likely cover tens of millions of Americans who are older or have medical conditions such as obesity, diabetes or heart disease.

But the committee’s close vote reflected doubts about the pill’s effectiveness and concerns that it could cause reproductive harm.

“The efficacy of this product is not overwhelmingly good,” said Dr. David Hardy, an infectious-disease physician in Los Angeles. Still, he voted to recommend the drug, saying “there is a need for something like this.”

Other members of the committee who voted against authorization said more research was needed about the drug’s safety. “The risk of widespread effects on potential birth defects, especially delayed effects on the male, has not been adequately studied,” said Dr. Sankar Swaminathan, an infectious disease specialist at the University of Utah.

The pills, which doctors will prescribe and will be dispensed at pharmacies, are much more convenient and are expected to reach many more people than the monoclonal antibody treatments that have typically been used to aid high-risk Covid patients. The antibody treatments are expensive and typically given intravenously at hospitals or clinics.

The Biden administration has been hoping that the emergence of the antiviral pills from Merck and Pfizer will help end the most acute phase of the pandemic. The U.S. government has spent billions of dollars to secure millions of treatment courses of the new pills.

Merck’s clinical trials primarily enrolled people who were infected with the Delta, Mu and Gamma variants of the coronavirus. Scientists have yet to run experiments to see how well the pills block Omicron viruses from replicating. But there are reasons to think they would remain effective even if the variant can sometimes evade vaccines, as well as monoclonal antibodies.

A federal judge blocks Biden’s vaccine mandate for U.S. health workers.

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Credit...Stephanie Keith/Getty Images

A federal judge issued a preliminary injunction on Tuesday to halt the start of President Biden’s national vaccine mandate for health care workers, which had been set to begin next week.

The injunction, written by Judge Terry A. Doughty, effectively expanded a separate order issued on Monday by a federal court in Missouri. The earlier one had applied only to 10 states that joined in a lawsuit against the president’s decision to require all health workers in hospitals and nursing homes to receive at least their first shot by Dec. 6 and to be fully vaccinated by Jan. 4.

“There is no question that mandating a vaccine to 10.3 million health care workers is something that should be done by Congress, not a government agency,” Judge Doughty, of U.S. District Court for the Western District of Louisiana, wrote. He added: “It is not clear that even an act of Congress mandating a vaccine would be constitutional.”

The judge, who was nominated to the court by former President Donald J. Trump, also wrote that the plaintiffs had an “interest in protecting its citizens from being required to submit to vaccinations” and to prevent the loss of jobs and tax revenue that may result from the mandate.

Several cities and states had already imposed their own vaccine mandates for health care workers, in an effort to contain outbreaks that were often passed from communities into medical settings like nursing homes. The momentum for vaccine mandates gained steam during the summer as the Delta variant swept through nursing homes, causing spikes in staff and resident infections, as well as overwhelming hospitals in many states with another Covid surge.

Some of the larger hospital chains and several big nursing home operators also began requiring staff vaccinations, before the president began calling for nationwide compliance. Vaccinations among health care employees have increased since the summer, although cases among residents and staff remain in the thousands reported each week. Nationwide, the immunization rate among nursing home staffs is more than 74 percent, although much lower rates still exist in some regions.

In leading a 14-state lawsuit against the mandate, Attorney General Jeff Landry of Louisiana said the federal mandate would blow holes in state budgets and exacerbate shortages in health care facilities.

The Biden administration tied compliance with the vaccine mandate to federal funding, requiring immunizations of millions of workers at hospitals, nursing homes or other health facilities that heavily rely on the Medicare or Medicaid programs. But many health care providers — especially nursing home and rural hospital operators — complained that staff members who were hesitant to be immunized would leave, aggravating employee shortages that plagued the industry long before the pandemic.

Those complaints helped swell opposition in many states, like Texas and Florida, that have been vehemently against dictates on vaccines, mask-wearing and other federal policies at the heart of public health advice during the pandemic.

More than a dozen states and some employers joined forces to fight a broader mandate that would require private employers of 100 or more workers to impose companywide immunization. An appeals court has temporarily blocked that mandate as well, as the challengers to the policy pursue their arguments that the Occupational Safety and Health Administration overstepped its authority.

In response to recent court decisions, the Centers for Medicare & Medicaid said in a statement, “While we cannot comment on the litigation, CMS has remained committed to protecting the health and safety of beneficiaries and health care workers. The vaccine requirement for health care workers addresses the risk of unvaccinated health care staff to patient safety and provides stability and uniformity across the nation’s health care system.”

The injunction issued on Tuesday is a first step in the lawsuits against the vaccine mandate. The cases still have to be argued before a judge, and any lower-court ruling will likely be appealed.

LeBron James enters N.B.A. health and safety protocols.

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Credit...Ringo H.W. Chiu/Associated Press

Los Angeles Lakers star forward LeBron James has entered the N.B.A.’s coronavirus health and safety protocols, the team announced Tuesday.

James missed the team’s game Tuesday night against the Sacramento Kings and would likely miss at least 10 days if he is in the protocols because he tested positive for the coronavirus. The Lakers have yet to confirm that James has tested positive, but after the game James’s teammate Anthony Davis made comments that indicated that was the case.

“He said he’s good,” Davis told reporters. “I think he’s asymptomatic which is a good sign. We want to make sure that he gets back. Health is most important. It’s bigger than basketball.”

Lakers Coach Frank Vogel told reporters before the game that he found out Tuesday morning that James had entered the health and safety protocols. Vogel said the team arranged for James to get “back to L.A. safely.”

James, 36, said before the season that he had been vaccinated against Covid-19.

Typically, players who are vaccinated face less stringent requirements than unvaccinated players. After Thanksgiving, though, the league implemented enhanced testing requirements even for vaccinated players, according to documents sent by league officials to each of the 30 teams. They did so with the expectation that the holiday would increase players’ potential exposure to the virus.

Under the current guidelines, James would be forced to sit out for at least 10 days unless he was able to return multiple negative results for the virus.

“We just want the best for him right now,” Vogel said. “That’s where our thoughts are. We have a next man up mind-set. It’s an 82-game season. You got to deal with guys being in and out of the lineup. We’ve been without him some already this season.”

Tuesday’s game was the 12th James has missed this season. He missed 10 because of ankle and abdominal injuries. He also missed the Lakers’ game against the Knicks earlier this month after being suspended for the first time in his 19-season career.

Federal health officials say that they are expanding the search for Omicron in the U.S.

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Dr. Rochelle P. Walensky, the Centers for Disease Control and Prevention director, said the agency was working to identify and contain any potential cases of the coronavirus Omicron variant in the U.S., but had not found a case so far.CreditCredit...Stefani Reynolds for The New York Times

Top federal health officials said on Tuesday that they were expanding a surveillance program at some of the largest U.S. airports as part of a sprawling effort to identify and contain what could be the first cases of the Omicron coronavirus variant in the United States.

Dr. Rochelle P. Walensky, the Centers for Disease Control and Prevention director, said at a White House news conference on the pandemic that the agency was “actively looking” for the variant but had not found a case so far among the many positive virus samples sequenced around the nation each week. Cases of the Delta variant, which drove a devastating summer surge, still make up 99.9 percent of those samples.

Four international airports — in New York, Atlanta, Newark and San Francisco — would enhance screening in a search for possible Omicron cases. “This program allows for increased Covid testing for specific international arrivals, increasing our capacity to identify those with Covid-19 on arrival to the United States,” she said.

When asked whether President Biden planned to consider tightening recently relaxed restrictions on travel between the United States and Canada given the Omicron variant, the White House press secretary, Jen Psaki, told reporters separately on Tuesday that all decisions would be based on the recommendations of the president’s medical advisers. She said those advisers had not recommended new restrictions.

The White House last week announced a ban on travel from eight countries in southern Africa, a move questioned by some global health experts who said it amounted to a kind of punishment of South Africa for its transparency.

The new variant, which carries a startlingly high number of mutations, has caused fears among scientists and health officials across the globe about a more transmissible virus less susceptible to vaccines. Dr. Anthony S. Fauci, the government’s top infectious disease expert, reiterated at the news conference with Dr. Walensky that it was still too early to truly understand how dangerous the variant might be. Mr. Biden on Monday said the variant was “a cause for concern, not a cause for panic.”

It would likely be weeks before scientists studying the new virus were able to determine more about its properties, Dr. Fauci cautioned again on Tuesday. “We are hoping, and I think with good reason to feel good, that there will be some degree of protection,” from available vaccines, Dr. Fauci added. Asked about reports that the variant was causing only mild illness in younger people, he warned: “Be careful about bread crumbs. They may not tell you what kind of loaf of bread you have.”

Dr. Walensky said that the C.D.C. was examining ways to make international travel safer, possibly by testing for the virus closer to a traveler’s flight and “additional post-arrival testing and quarantine.” She said the C.D.C. was working with airlines to collect information on passengers that can be used for contact tracing if a case of Omicron is discovered. A spokesman for the agency said Tuesday night that C.D.C. plans to toughen testing and screening of international fliers to the United States by requiring them to provide a negative result from a test taken within 24 hours of departure.

Dr. Walensky also described an ongoing domestic effort to identify initial cases of the variant, saying that the C.D.C. was holding regular calls with local health officials, public health organizations and state laboratories, which help to sequence samples.

The United States had already made substantial progress this year in scaling up the number of virus samples examined for possible worrisome variants, she said, sequencing roughly 80,000 samples each week and one in seven positive P.C.R. test samples, a volume that suggests it might not be long before scientists find the virus.

Dr. Fauci and Dr. Walensky continued to urge people to get their boosters, which they said would provide more protection in the face of the new variant. Jeffrey D. Zients, the White House’s Covid-19 response coordinator, said that over 100 million fully vaccinated American adults were eligible for the doses but had not yet received one.

A surge of protective antibodies after a booster shot would likely still be formidable against Omicron, helping to prevent severe illness, Dr. Fauci said, even though the vaccine was developed to fight off the original form of the coronavirus.

Mr. Zients said that the federal government was already thinking about what a vaccination campaign with a newly formulated shot might look like, as pharmaceutical companies studied the possibility. “This includes conversations about the most appropriate regulatory pathway for review and authorizations,” he said.

A preliminary review by federal regulators determined that virus tests used in the U.S. would be able to detect the variant, Mr. Zients added.

Dr. Janet Woodcock, the acting Food and Drug Administration commissioner, said in a statement Tuesday that the agency was monitoring the new variant, citing guidance regulators released earlier this year about how it would evaluate new variant-specific vaccines on an expedited timeline.

Two top federal vaccine regulators who recently departed the agency argued in a Washington Post opinion column this week that younger, healthier people with a less urgent need for a booster dose might be better off waiting for a retooled vaccine that more precisely targets a worrisome new variant.

Maggie Astor contributed reporting.

Covax delivers 11 million vaccine doses in 24 hours, its biggest day ever.

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Credit...Lynsey Addario for The New York Times

The head of the United Nations-backed global vaccine distribution program said on Tuesday that it had shipped more than 11 million doses in the last 24 hours, its busiest day of deliveries ever.

The leader, Seth Berkley, said the program had been asking donors and vaccine manufacturers for months “to give us better-quality donations” and more information on when doses would arrive. That message, he wrote on Twitter, “is just starting to be heard.”

Covax, a multibillion-dollar alliance between international health bodies and nonprofits, was supposed to ensure that poor countries got access to coronavirus vaccines and that rich countries did not hoard them. It has struggled in that mission and had to scale back its goals.

The new Omicron variant has prompted rich, highly vaccinated countries like the United States, Britain and Japan to expand their booster programs, while poorer, less vaccinated countries like South Africa are still trying to get first doses to residents.

Only about 5 percent of people living in low-income countries have received even one vaccine dose, according to the Kaiser Family Foundation, a health organization that is tracking coronavirus infections and vaccine distribution.

“Getting doses to countries is the easy part,” Mr. Berkley wrote on Twitter. Making the doses readily available “is harder & requires active collaboration” among manufacturers, shipping companies and officials in those countries.

Omicron was present in Europe days before flights were halted.

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Credit...Peter Dejong/Associated Press

Two people who tested positive for the coronavirus in the Netherlands more than a week ago were infected with the Omicron variant, Dutch health officials reported on Tuesday.

The timing is significant because it suggests that the variant was already present in the country for at least a week before the arrival of two flights from South Africa on Friday, and before the World Health Organization labeled Omicron a “variant of concern,” the step that prompted countries around the world to ban flights from southern Africa, where researchers first identified the variant.

“We have found the Omicron coronavirus variant in two test samples that were taken on Nov. 19 and Nov. 23,” the Dutch health ministry said in a statement on Tuesday. “It is not yet clear whether these people had also visited southern Africa.”

The two samples were taken by municipal health services at public testing sites, and health authorities have started contact tracing in those areas, Dutch health officials said.

Although little is known yet about how transmissible Omicron is, or whether it can evade existing vaccines, its detection in Botswana and South Africa has created the most uncertain moment of the pandemic since the highly contagious Delta variant emerged in the spring.

The announcement from the Netherlands also highlighted that scientists still cannot say with certainty where or when the variant originated. So far, the first known sample of the Omicron variant was collected on Nov. 9 in South Africa, according to Gisaid, an international database for disease variants.

Officials across Europe fear that Omicron will add pressure on countries that are already in the grip of some of the worst coronavirus surges they have seen. Among them was France, which on Tuesday reported about 47,000 new cases over the past 24 hours and sharply rising hospitalizations — mostly thought to be driven by the Delta variant.

The European Center for Disease Prevention and Control said on Tuesday that so far, 44 cases of the new variant have been confirmed in 11 European countries. And in Britain, health officials announced at least 22 confirmed cases involving Omicron, including 13 in England and 9 in Scotland, bringing a new wave of tightened public health restrictions.

Andrea Ammon, the agency’s director, told an online news conference that all the confirmed cases in Europe have exhibited mild symptoms or none at all, and that authorities were analyzing six further “probable” cases. She said that health officials were conducting additional tests on people who have recovered from illness brought on by Omicron to help assess how the variant behaves in vaccinated people, and that more information was expected in a “couple of weeks.”

Countries across the European Union have scrambled to reinforce travel restrictions in the hope of curbing the spread of the heavily mutated variant, as the W.H.O. warned that the risk it posed was “very high.”

But the W.H.O.’s top official on Tuesday cautioned countries that their responses were “not evidence-based.”

“We still have more questions than answers about the effect of Omicron on transmission, severity of disease, and the effectiveness of tests, therapeutics and vaccines,” Dr. Tedros Adhanom Ghebreyesus said in Geneva.

The Dutch officials’ announcement about the two Omicron cases came after a chaotic series of closures in Amsterdam, which left some 600 passengers on two flights from South Africa stranded for a time on Friday. Some 61 passengers on those flights tested positive for the coronavirus, and at least 14 of them were found to be carrying the Omicron variant.

The Netherlands imposed tighter restrictions starting on Sunday in response to a Covid wave that began before Omicron was identified, ordering many businesses, including bars, restaurants and theaters, to close from 5 p.m. to 5 a.m. Dutch health officials reported more than 22,000 new coronavirus cases on Monday, one of the country’s highest daily totals since the pandemic began.

Reporting was contributed by Carl Zimmer, Adeel Hassan, Megan Specia and Aurelien Breeden.

Pfizer asks the F.D.A. to authorize boosters for 16- and 17-year-olds.

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Credit...Mike Kai Chen for The New York Times

Pfizer asked federal regulators on Tuesday to authorize a booster shot of its coronavirus vaccine for 16- and 17-year-olds, according to the company’s chief executive, Albert Bourla. The request is likely to mean that several million teenagers could quickly become eligible for an additional shot.

The Food and Drug Administration is expected to act promptly on Pfizer’s request, perhaps within a week, according to people familiar with the planning.

The agency authorized the vaccine, developed with BioNTech, on an emergency basis a year ago for everyone 16 and older, fully approving it for that age group in August. But at this point, those 18 or older are eligible for booster shots.

Recipients of Pfizer and Moderna vaccines are eligible for the additional injection six months after their second shot. Those inoculated with Johnson & Johnson’s vaccine, a one-shot regimen, are eligible for a booster two months after the shot.

According to data from the Centers for Disease Control and Prevention, 2.3 million 16- and 17-year-olds received their second dose of Pfizer’s vaccine at least six months ago. By the end of the year, the number is predicted to be about three million, or 36 percent of the population in that age group.

After months of angst and division among scientific advisers, the Biden administration’s booster rollout is now in full swing. All adults became eligible for booster shots on Nov. 19, although the C.D.C. only recommended them for people over 50 as well as those 18 and older living in long-term care facilities.

On Monday, the C.D.C. altered its guidance and urged all adults to get a booster shot either six months after their second dose of Moderna’s or Pfizer’s vaccine or two months after their shot of Johnson & Johnson. President Biden described boosters Monday as part of the administration’s strategy to combat the new variant, Omicron.

More than 40 million adults have gotten an extra shot since the F.D.A. first authorized the extra injections for select population groups in late September. At least another 90 million are eligible for boosters now, according to the C.D.C.’s data.

A South African company is finalizing a deal to sell the J. & J. vaccine.

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Credit...Siphiwe Sibeko/Reuters

The South African drug maker Aspen Pharmacare said on Tuesday that it was finalizing the first agreement to control production of a Covid-19 vaccine in Africa.

The deal would allow Aspen to bottle and market the Johnson & Johnson vaccine across Africa under the brand name Aspenovax. Aspen would have the right to determine to whom the vaccine would be sold, in what quantities and at what price — but not to produce the actual contents of the vaccine. Instead, Johnson & Johnson would direct other facilities to make the ingredients to send to Aspen for the company to blend into vaccine doses.

Control over the intellectual property of Covid vaccines has become a point of increasing contention in the debate over how best to address the huge gap in vaccine access across African nations.

Aspen already bottles the Johnson & Johnson vaccine under a previous agreement, but as a contract manufacturer, it has had no say on where to ship the doses. Earlier this year, millions of doses bottled at Aspen’s plant in the city of Gqeberha were exported to other parts of the world at a time when many African countries had vaccinated fewer than 5 percent of their citizens. The arrangement generated harsh criticism after it was revealed by The New York Times, and the new agreement could avert a similar situation in the future.

Strive Masiyiwa, the African Union’s special envoy for Covid, said that getting to 70 percent vaccination coverage in Africa would require 900 million doses of vaccines.

The State Department’s vaccine envoy is leaving after less than a year.

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Credit...Pool photo by Al Drago

The State Department’s coronavirus vaccine envoy is leaving her post after less than a year, at a time when the new Omicron variant is showing the peril of failing to protect large areas of the world from the virus.

The envoy, Gayle E. Smith, took a leave of absence from her job as chief executive for the ONE Campaign, an advocacy organization that seeks to eradicate poverty and preventable disease, to join the Biden administration in April. It was not clear on Tuesday why she was leaving the envoy post now, and she did not respond to a request for comment. People close to her said she stayed longer than the six months she had initially committed to the government position.

“She leaves behind a phenomenal set of accomplishments, a robust team and network who are prepared to carry our important work forward, and a comprehensive set of next steps to build on our progress,” Secretary of State Antony J. Blinken said in a statement on Tuesday announcing Ms. Smith’s departure.

He added that, “as Gayle has said many times, our work to defeat this pandemic and prevent future health threats is not over.”

The United States has donated more coronavirus vaccine doses to Covax, the global distribution program, than any other single country. During Ms. Smith’s tenure, the United States gave a total of 260 million vaccine doses to more than 110 countries and economic blocs, and Mr. Blinken said the United States was “well on our way” to the 1.2 billion doses that President Biden promised to deliver.

Still, only about 5 percent of people living in low-income countries have received even one vaccine dose, according to the Kaiser Family Foundation, a health organization that is tracking coronavirus infections and vaccine distribution.

Across Africa, about 8 percent of people have received one dose, leaving hundreds of millions of people vulnerable to new variants that might otherwise be repelled by vaccines. The emergence of the Omicron variant, which was first detected in southern Africa last week, is an example of what experts have warned for more than a year would happen if vaccines were not made readily available worldwide, rather than just in wealthy nations.

“We’re really far behind in achieving any level of equity” in vaccine distribution, said Jen Kates, the director of global health and H.I.V. policy at the Kaiser Family Foundation. “We’re far from it at this point.”

Ms. Kates said the Biden administration deserved some credit for trying to motivate other donors to deliver more doses to poorer countries, even as Mr. Biden made vaccinating Americans a top priority.

She noted that in many lower-income countries, vast hurdles remain in providing the cold storage and transportation necessary to “get shots in arms” after vaccine doses arrive.

“That’s going to take more financial resources and a more herculean effort than what has come so far,” Ms. Kates said.

Ms. Smith will be replaced for now by Mary Beth Goodman, a senior member of the State Department’s vaccine diplomacy office who has worked for years on global health, anti-corruption and economic programs during Democratic administrations. A permanent envoy will be named in coming weeks, officials said.

China plans to deliver Covid vaccine doses to Africa.

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Credit...Seyllou/Agence France-Presse — Getty Images

As Africa grapples with the new Omicron coronavirus variant, Xi Jinping, China’s leader, has pledged to deliver another billion doses of vaccines to countries on the world’s least vaccinated continent.

The announcement from Mr. Xi is part of China’s continuing effort to burnish its image as a responsible global power helping to fight the pandemic, and it comes at a crucial time for countries in Africa, especially the southern region, where Omicron was first documented. Scientists fear that Omicron could already be spreading rapidly there, but they cautioned that much about the variant remains unknown, including where it originated.

Health officials in South Africa said on Monday that Omicron appeared to be driving a new wave there. The daily average of new cases in the country has increased by more than 1,500 percent over the past two weeks, according to data from the Center for Systems Science and Engineering at Johns Hopkins University, although the case numbers remain far below the year’s earlier peaks.

10,000
20,000 cases
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7–day average
17,439
Source: Center for Systems Science and Engineering (CSSE) at Johns Hopkins University. The daily average is calculated with data that was reported in the last seven days.

Still, officials urged the public not to panic over the variant, and said it was still too soon to accurately assess whether it has a higher rate of transmission or causes more hospitalizations or severe illness.

With wealthy nations hoarding most of the global vaccine supply, Africa has the lowest vaccination levels of any continent, with just 10.3 percent of the population receiving at least one dose, compared with rates of at least 60 percent to over 80 percent in Europe, Asia, Latin America and the United States and Canada.

But in recent weeks, vaccine doses have started to flow into parts of Africa, and countries including South Africa — where nearly one-quarter of people are fully inoculated, one of the highest rates on the continent — are now dealing with the challenge of how to rapidly administer them. Shabir Mahdi, a virologist at the University of the Witwatersrand in Johannesburg, said that where doses are available, “countries are struggling to scale up.”

Mr. Xi’s announcement, made in a speech late Monday via video link at the opening of the Forum on China-Africa Cooperation, also appeared to be part of an effort to shift attention away from Beijing’s missteps in its early handling of the coronavirus crisis.

He said that 600 million of the one billion vaccine doses would be donated, and that the rest would be provided through other means, like joint production between Chinese companies and African countries. He also said that China would send 1,500 medics and public health experts to Africa.

Global coronavirus cases by region

This chart shows how reported cases per capita have changed in different parts of the world.

  • Africa
  • Asia-Pacific
  • Europe
  • Latin America
  • Middle East
  • U.S. and Canada
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Sources: Center for Systems Science and Engineering at Johns Hopkins University and state and local health agencies (cases); World Bank and U.S. Census Bureau (population data).

China aims to help the African Union achieve its goal of vaccinating 60 percent of the continent’s population by 2022, Mr. Xi said.

Chinese officials had previously said that Beijing would make its vaccines affordable and give priority to Africa, where it has rapidly increased its investments in recent years. The new pledge of one billion doses comes after the more than 155 million shots that China had previously pledged to the continent. Of those, about 107 million have been delivered to 46 African countries so far, according to Bridge Beijing, a consultancy that tracks China’s impact on global health.

After Omicron emerged, The Global Times, a Chinese tabloid controlled by the Communist Party, boasted of China’s success in thwarting the transmission of the coronavirus, and said the West was paying the price for its selfish policies.

“Western countries control most of the resources needed to fight the Covid-19 pandemic,” the piece read. “But they have failed to curb the spread of the virus and have exposed more and more developing countries to the virus.”

Questions remain, however, about the efficacy of the Chinese-made vaccines. Several countries that had relied heavily on them to inoculate large parts of their populations were spooked by subsequent outbreaks this year.

Omicron adds to the uncertainty, as scientists around the world race to find out whether the current vaccines protect against it. Sinovac Biotech, one of China’s main vaccine producers, told The Global Times that it was also studying its vaccine’s effectiveness against Omicron.

GLOBAL ROUNDUP

Greece makes vaccines mandatory for people 60 or older, with fines for not complying.

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Prime Minister Kyriakos Mitsotakis of Greece said those 60 or older who have not gotten their first shot by Jan. 16 would face a monthly fine of 100 euros ($113).CreditCredit...Alexandros Avramidis/Reuters

The prime minister of Greece announced on Tuesday that Covid shots would be obligatory for people ages 60 or older, and that those who failed to book a first shot by Jan. 16 would face monthly fines of 100 euros ($113).

About 500,000 people in Greece ages 60 or older have yet to be vaccinated, Prime Minister Kyriakos Mitsotakis told a cabinet meeting, adding that the revenue from the fines would go to state hospitals that have been stretched by the pandemic.

Describing the policy as “an act of justice for the vaccinated,” Mr. Mitsotakis said he had worried about penalizing people but hoped they would see the move as an act of “encouragement, not repression.”

“I felt a duty to stand by the most vulnerable, even if it might temporarily displease them,” he said.

Greece is averaging more than 6,400 new cases a day, among its highest numbers since the start of the pandemic, according to the Center for Systems Science and Engineering at Johns Hopkins University. With concerns that the winter holidays will lead to further spread, Mr. Mitsotakis said more free testing kits would be made available over the next two months.

2,000
4,000
6,000 cases
Mar. 2020
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
Jan.
Feb.
Mar. 2021
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
7–day average
4,642
Source: Center for Systems Science and Engineering (CSSE) at Johns Hopkins University. The daily average is calculated with data that was reported in the last seven days.

More than 60 percent of Greece’s population is fully vaccinated. This month, Greece barred unvaccinated people from cinemas, theaters, museums and gymnasiums, joining a growing number of European nations imposing new restrictions on those who have not had Covid shots.

Here are other developments from around the world.

  • Thirteen cases of the Omicron variant have been identified in England and nine in Scotland, the British and Scottish governments confirmed on Tuesday, bringing the total number of known cases in Britain to 22. Scotland’s first minister, Nicola Sturgeon, said the nine cases there were all linked to a single private event. Sajid Javid, Britain’s health secretary, said officials did not yet know whether all of the cases in England were linked to travel to southern Africa, raising concerns about potential community transmission.

  • Covax, the global vaccine-sharing initiative, announced on Tuesday that it had allocated more than 4.7 million doses to North Korea, which is not believed to have administered any shots yet. The reclusive government has reported no coronavirus cases and has turned down several previous offers of doses, including from Covax, China and Russia. But in June, North Korea’s leader, Kim Jong-un, said that lapses in his country’s anti-pandemic campaign had caused a “great crisis,” according to state media.

  • Cholendra Shumsher Rana, the chief justice of Nepal’s Supreme Court, tested positive for the coronavirus on Monday evening and has pneumonia, but is in stable condition, said Dr. Prabin Nepal, a spokesman for the Armed Police Force Hospital outside the capital, Kathmandu. Mr. Rana — a central figure in recent political turmoil in Nepal, a Himalayan country hit hard economically by the coronavirus — has been facing growing pressure to resign over corruption accusations, and court watchers in Nepal said there was a good chance he would not return to the bench.

  • With the exception of passengers arriving from the United States, Canada is requiring all air travelers, vaccinated and unvaccinated, to be tested for Covid-19 at the airport and to isolate until results are received. The new measures are a response to the identification of the new Omicron variant of the coronavirus in Canada. The government also directed its vaccine advisory committee to review guidance on booster shots to address the new variant.

  • Brazil detected its first confirmed case from the Omicron variant after a couple who recently traveled from South Africa to Brazil both tested positive, health officials said Tuesday afternoon. A second sample is being tested to confirm the presence of the variant, which would be the first confirmed in Latin America.

Reporting was contributed by Megan Specia, Mark Landler, Jin Yu Young, Bhadra Sharma, Vjosa Isai and Ernesto Londoño.

Regeneron says its antibody treatment may not be as effective against Omicron, but testing is underway.

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Credit...Shannon Stapleton/Reuters

Regeneron said on Tuesday that its Covid-19 antibody treatment might be less effective against the Omicron variant of the coronavirus, an indication that the popular and widely beneficial monoclonal antibody drugs may need to be updated in case the new variant spreads aggressively.

The company said that previous laboratory analyses and computer modeling of certain mutations in the Omicron variant suggest that they may weaken the effect of the treatment. But studies using the variant’s full sequences have not been completed, it said.

The company said it had already been testing future antibody drug candidates, and that preliminary analyses indicated that some of those “may have the potential to retain activity against the Omicron variant.” More data is expected in the coming month, it said.

“What we have to admit is, in the course of the past six days, our urgency has increased,” Dr. George Yancopoulos, Regeneron’s president and chief scientific officer, told The Wall Street Journal in an interview. “What started out as a backup plan has now been made a lot more urgent.”

The Omicron variant has caused alarm among scientists because it contains mutations in the spike protein, the target of the government-supplied monoclonal antibody treatments made by Regeneron and Eli Lilly.

Scientists have also been scrambling to gather data on how effective the current vaccines will be against Omicron. Antiviral pills, including drugs from Merck and Pfizer that federal regulators are considering authorizing soon, are expected to hold up well against the variant because they target a different site of the virus from where Omicron’s mutations are clustered.

Monoclonal antibody treatments, given in a single infusion, use lab-made copies of the antibodies that people generate naturally when fighting an infection. They have been shown to significantly shorten patients’ symptoms. Regeneron’s cocktail reduces the risk of hospitalization by 70 percent.

The company said the treatment was effective against the Delta variant, which remains the dominant form of the virus in the United States.

Europe was already facing a virus surge. See how Omicron is adding pressure.

Europe is once again at the epicenter of the pandemic. More cases are being reported each day than at any previous point in the pandemic. And governments have been forced to reimpose the types of strict restrictions that most Europeans thought were behind them.

The discovery of the Omicron variant has added urgency to European leaders’ efforts to curtail the surge. Cases of the new variant have so far been detected in travelers to more than 10 European countries, including Denmark, the Netherlands and Britain.

European leaders have tried to strike a balance between increasing caution and avoiding panic in responding to the new threat. But the winter surge has highlighted the disparities in vaccination rates across the continent. Although cases are rising in many countries, only those with the lowest vaccination rates are seeing deaths from Covid-19 reaching the levels that came after similar surges last winter.

Here is a closer look at where cases are rising in Europe:

Israel’s swift response to Omicron was partly driven by a war game.

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Credit...Abir Sultan/EPA, via Shutterstock

Israel’s swift response to the discovery of the Omicron variant — including closing its borders to nonresident foreigners — was influenced in part by a government-wide “war game” held earlier in November, officials said.

In that exercise, senior officials simulated how they would respond to a fictional scenario that bore striking similarities to what is happening now.

In a daylong drill on Nov. 11, Israeli officials had to respond to a hypothetical new “Omega” virus strain that would be more resistant to vaccines and would spread to Israel from two foreign countries during the second half of November.

In the simulation, officials including Prime Minister Naftali Bennett decided to keep Israel’s borders open to tourists into December, only to find that by the later stages of the exercise, the country’s hospitals were overwhelmed with patients. The correct decision, the participants concluded afterward, would have been to close Israel’s borders to most foreigners immediately, according to Yaacov Ayish, a retired general who helped plan the drill.

“It was one of the lessons,” Mr. Ayish said. “Suddenly, all the government agencies and the military had to analyze it as an option.”

5,000
10,000 cases
Mar. 2020
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
Jan.
Feb.
Mar. 2021
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
7–day average
966
Source: Center for Systems Science and Engineering (CSSE) at Johns Hopkins University. The daily average is calculated with data that was reported in the last seven days.

The outcome was one of the factors that influenced Israel’s real-life decision on Saturday night to bar all foreign visitors, a move it made before any other country, said Keren Hajioff, a spokeswoman for Mr. Bennett.

Throughout the drill, participants were shown fictional television news reports to help set the scene for the next stage of the simulation. The participants in the drill drew at least one more conclusion that is reflected in Israel’s response: Officials realized that the stock of P.C.R. tests on hand at that time might not be advanced enough to detect future variants of the virus.

That helped prompt the Israeli government to order millions of higher quality P.C.R. tests, which are now being used to screen for Omicron, Ms. Hajioff said.

Israel’s cabinet on Sunday also granted Shin Bet, the domestic intelligence agency, temporary permission to access the phone data of people with confirmed cases of Omicron in order to trace who those people met recently. The agency was given similar powers during earlier waves of the pandemic.

‘The Daily’: Here’s what we know about Omicron.

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Credit...Remko De Waal/EPA, via Shutterstock

The Omicron variant gained world attention a week ago, when researchers in southern Africa detected a version of the coronavirus that carried 50 mutations.

Thirty of these mutations are on the spike protein — arguably the most important part of the virus — and of those, 26 were unique mutations we hadn’t seen before. By contrast, the Delta variant had 10 unique mutations and Beta had 6.

When scientists look at coronavirus mutations, they worry about three things: Is the new variant more contagious? Is it going to cause people to get sicker? And how will the vaccines work against it?

This episode of “The Daily” explores when there will be answers to these three questions, and looks at the discovery of the variant and the international response to it. Listen below:

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Listen to ‘The Daily’: What Is the Omicron Variant?

The World Health Organization has declared that this mutation of the coronavirus poses a very high risk to public health. How did they come to that conclusion?
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transcript

Listen to ‘The Daily’: What Is the Omicron Variant?

The World Health Organization has declared that this mutation of the coronavirus poses a very high risk to public health. How did they come to that conclusion?

michael barbaro

From The New York Times, I’m Michael Barbaro. This is The Daily.

[music]

Today, the World Health Organization has declared that the omicron variant of the coronavirus poses a, quote, “very high risk to public health.” I spoke with my colleague, Apoorva Mandavilli, about how it is that scientists came to that conclusion so quickly.

It’s Tuesday, November 30.

OK, I think we’re ready. When you’re ready to record, we’re ready to record, so.

apoorva mandavilli

Really quick, we got an email about pronunciation. Is it omicron or omicron? I mean, I’ve been saying—

michael barbaro

I think it’s O.

apoorva mandavilli

—omicron. It’s like somewhere in between. It’s neither ah nor—

michael barbaro

Wait, wait, what are you saying?

apoorva mandavilli

Omicron, omicron. It’s kind of like omicron, but it’s not omicron. You know what I mean? It’s like omicron.

michael barbaro

Can you just say it really slowly so we all can get on the same page?

apoorva mandavilli

Omicron?

michael barbaro

Omicron, not omicron.

apoorva mandavilli

Yeah, not omicron. Yeah, I mean, I don’t think it really matters that much, honestly. I’m going with omicron. That OK?

michael barbaro

Omicron, omicron, omicron.

apoorva mandavilli

Yeah.

michael barbaro

OK, at this point, Apoorva, I’m curious, what named variant are we on now in terms of numbers? What number is this?

apoorva mandavilli

We’ve probably seen thousands and thousands of variants of the virus. But in terms of ones that have been important enough or of concern enough to get a Greek letter, this is seven. And if you want to think about the ones that the World Health Organization said are really serious variants of concern, as the WHO calls them, this is number five. So there was alpha and then beta and gamma and delta, and now we’re on omicron.

michael barbaro

Mm-hmm. And we’re talking to you at what feels like a curious moment in the story of this variant, omicron, when public health experts have told us that we should be worried about it, but also not too worried because there’s so much that they say they don’t know. So I think the best place to begin this conversation is with the question of why those experts got so worried in the first place. And where do you think that story starts?

apoorva mandavilli

The story starts in Southern Africa, where this variant was first detected. And I want to be very clear, that’s where it was first detected. We don’t know if it really originated there. And it starts, really, less than a week ago.

archived recording

Now scientists in South Africa are warning of a new strain of Covid-19.

apoorva mandavilli

South African researchers first heard of this variant last Tuesday. And they sequenced this variant, which means they looked at the genetic code of the virus. And they saw something that made them really nervous.

michael barbaro

Which is what? What did they see?

archived recording

The variant, which is yet to be named, appears to have a high number of mutations.

apoorva mandavilli

They saw that this variant has dozens of new mutations and dozens of mutations that they had not seen before.

archived recording

And that is of concern because there’s a possibility it could be able to evade our immune response and be even more transmissible.

michael barbaro

Well, explain that. I mean, my sense from talking to you, talking to our colleagues on the science desk, is that the coronavirus mutates constantly. So what is it about these mutations that got them anxious?

apoorva mandavilli

Right, the virus is always acquiring new mutations. So it’s not just the number. It’s that it has a lot of mutations in parts of the virus that are really important. So this variant has 50 mutations. And more than 30 of them are on the spike protein, which is arguably the most important part of the virus. And of that, 26 are unique mutations, meaning mutations that we’ve never seen before. By contrast, Delta had 10 unique mutations, and Beta had six. So this is just a lot that they’re seeing now in this variant.

michael barbaro

Right.

apoorva mandavilli

And when scientists look at mutations within viruses, they worry about three things. Is the variant more contagious? Is it going to cause people to get sicker? And will vaccines continue to work against it? This time, with this particular variant, they’re seeing mutations that make them worry about all three of those things.

michael barbaro

Hmm. So scientists are seeing mutations, just to summarize this, that could impact all three of the ways in which this variant could become a very real threat and make the pandemic worse.

apoorva mandavilli

Right, and they’re seeing multiple mutations that they think will affect each of those qualities that we don’t want to see in a virus.

michael barbaro

OK, give us an example of a set of mutations and how it might affect one of the three categories you just mentioned— contagiousness, severity of illness, or being able to evade vaccines.

apoorva mandavilli

Let me pick the one that we probably worry about the most, which is, will vaccines continue to work against this variant? There are three main parts of this virus that are important for antibodies to recognize the virus. In previous variants, we’ve seen, at most, mutations in two of those regions. And that’s been bad enough.

Like with the Beta variant, for example, we saw mutations in two of those regions. And the Beta variant was not as sensitive to vaccines as Delta or Alpha. This time, they’re seeing mutations in all three of those regions. And so that makes them worry that this one will be resistant to vaccines and more so even than any variant they’ve seen before, including Beta.

michael barbaro

So you’re saying that scientists immediately detect that this variant has many, many mutations that can make it harder for vaccinated people to fight off this virus.

apoorva mandavilli

Correct.

michael barbaro

Got it. OK, so let’s return to this chronology for a minute. You have these researchers in South Africa who start to sequence the genome of this new variant. They discover all these mutations in places on the virus that freak them out and make them nervous. It could make the virus more contagious, make illness from it more severe, and make the virus evade vaccines. What happens next?

apoorva mandavilli

The scientists did what all virus researchers do these days, which is they deposited the sequence in this database that geneticists all over the world look at. And scientists all over the world immediately saw the sequence, and they all got worried.

michael barbaro

So they agree with the scientists in South Africa that this is a worrisome set of mutations.

apoorva mandavilli

They do. In fact, one scientist told me after seeing the sequence that it was like a collection of the greatest hits of the variant that you never wanted to see together.

michael barbaro

Huh. OK, so I have to imagine that this is the moment, Apoorva, late last week when all our cell phones here in the United States started buzzing around Thanksgiving with news alerts that there was a scary new variant that had been first detected in South Africa.

apoorva mandavilli

It was. It was the moment when scientists everywhere started to sound the alarm. And by Friday, the day after Thanksgiving, the W.H.O. said this was a variant of concern. In the past, they’ve taken weeks to get to that point for any other variant. And this happened just about three days after the first detection of the variant. So this has all happened very fast. And that’s because of how many mutations this new variant has.

michael barbaro

But at this point late last week, and correct me if I’m wrong, it seems like a lot of this anxiety is on paper, right? It’s anxiety based on what scientists are seeing in the genetic sequencing. It’s not based on sudden or alarming changes in how people are responding to this variant on the ground.

apoorva mandavilli

Well, not entirely. I mean, these scientists have a reason for worrying, which is that, usually, when you see a cluster of mutations like this, it’s because there’s some advantage for the virus to have it. It allows the virus to survive better. But you’re right that we don’t know anything for sure yet and that most of it is still on paper. There are early hints from South Africa that maybe it’s more severe and maybe hospitalizations will go up. But it’s just too soon to say. Let me give you an example. So the scientists are worried that maybe this variant won’t respond to vaccines very well. But that’s not something they can just tell from looking at the sequence. So as soon as South African scientists found last week that this variant was circulating, immediately, within an hour, in fact, some South African scientists started doing those experiments. And by now, there are dozens of labs all over the world, all trying to answer this question. Will the vaccine still work against this variant?

michael barbaro

Mm-hmm, but we don’t have an answer.

apoorva mandavilli

We don’t have an answer yet because it takes time for these scientists to build an artificial version of this variant that they can then test against the vaccines. So it’s probably going to be at least a couple of weeks before we know anything. And that goes for the other two questions as well.

michael barbaro

Got it. So we won’t be able to answer the three big questions. Is this variant more contagious? Does it produce greater illness? Does it evade vaccines? We won’t know that for several weeks.

apoorva mandavilli

That’s right.

We have to basically wait and see. Is it spreading really fast? Are a lot of people ending up in the hospital? And then we have to wait for these lab experiments to tell us, does it respond to vaccines?

michael barbaro

We’ll be right back.

Of course, over the weekend, Apoorva, we did not see governments around the world wait for more scientific data about the variant or wait to react to these fears that it could be more serious.

apoorva mandavilli

We did not.

archived recording

The White House is now restricting travel from South Africa and seven neighboring countries. Hong Kong is also banning visitors from eight— Any of these countries within the last 14 days will be barred from entering Canada.

To protect the U.K. against the variant coming here from Southern African countries and added four more countries to the Red List.

apoorva mandavilli

And you can see the impulse there. They’re all scrambling to contain the spread of the virus. And many countries declared right away that they were going to restrict visitors from Southern African countries.

archived recording

We are raising a red flag. We understand that we’re on the verge of a state of emergency.

apoorva mandavilli

And some, like Israel, Japan and Morocco, decided that they would bar all foreign visitors. But I’m not sure that really works, because as of today, the virus is already in at least 15 countries.

michael barbaro

Well, I think that brings us up to now, where we have countries imposing these travel restrictions and simultaneously finding that the virus is already inside their borders. So I think a question that many people have is, do these travel restrictions, which seem to be the world’s primary response, while we wait these two weeks for results on all this research, do they make any sense?

apoorva mandavilli

Pretty much every public health expert talked to says they don’t, that these travel bans do, really, nothing. They may delay it a tiny bit, but really, by the time countries discover that there is a variant that’s circulating, that variant is already everywhere.

archived recording

Good morning. The prime minister is urging calm after the new coronavirus variant called Omicron was detected in Australia.

apoorva mandavilli

It’s been in several European countries. It’s in Canada. It’s in Hong Kong. It’s in Australia.

archived recording

Also today, Britain, Germany, and Italy announced their first Omicron cases. They follow Belgium.

You almost have to expect that it’s going to eventually find its way into Canada. I think people were expecting—

apoorva mandavilli

Really, the world does not sequence enough of the virus to detect enough of the virus to be able to know which variants are circulating. So by the time anybody has sounded an alarm, the horse has left the barn already.

michael barbaro

Mm, so by the time the U.S., for example, as we just have, says no travelers from eight countries across Southern Africa, it’s too late.

apoorva mandavilli

Today, President Biden said it’s probably just a matter of time before it’s here.

archived recording (joe biden)

Travel restrictions can slow the speed of Omicron. It cannot prevent it, but here’s what it does. It gives us time.

apoorva mandavilli

But really, I think the scientists that I’ve talked to say it’s probably here already. We just don’t know that it is. And the other problem with these travel restrictions is that to the people in those countries, it feels like a punishment. It basically disincentivizes them from telling the world that there is this dangerous new variant that’s circulating.

michael barbaro

Why would it disincentivize them from sharing a variant with the world?

archived recording

Now these restrictions are completely unjustified and unfairly discriminate against our country and our Southern African sister countries.

apoorva mandavilli

When you block visitors from those countries and you impose these travel bans, you’re delivering a huge economic blow to a lot of those countries. And they were already doing poorly because of the pandemic till now.

archived recording

The prohibition of travel is not informed by science, nor will it be effective in preventing the spread of this variant.

apoorva mandavilli

So the South African officials and the scientists that I’ve been talking to are very upset because they feel that they did the world a favor by alerting everybody to this variant. There are scientists from all over the world asking them for samples and for sequences. And at the same time, they’re being told, you’re not welcome in our country.

archived recording

The only thing the prohibition on travel will do is to further damage the economies of the affected countries and undermine their ability to respond to and also to recover from the pandemic.

apoorva mandavilli

So it makes sense that the South African president just came out and said, please lift these travel restrictions, because it’s really unfair.

michael barbaro

On the subject of Southern Africa, Apoorva, what, if anything, should we make of the fact that this is where this variant was first detected?

apoorva mandavilli

Well, we one thing about Africa, which is that very few people in that continent have been vaccinated. And scientists have been saying for months now that the more people we leave unvaccinated in certain parts of the world, the higher the chances that we’ll see a dangerous new variant. In Africa, in particular, there are a lot of people who have weak immune systems, whether that’s because of H.I.V. or T.B. or malaria or these diseases that really sap people’s strength. There are a lot of immunocompromised people. And we know now that the virus acquires mutations the best in somebody who is immunocompromised.

michael barbaro

Can you just explain that?

apoorva mandavilli

In somebody who is immunocompromised, the virus will continue to replicate, to multiply for a long time at a very low level. So it’s like giving the virus this playing ground to experiment and come up with all kinds of new mutations. When you see a variant like Omicron that has 50 new mutations, it’s usually because it’s had a lot of time in one person, rather than acquired them one at a time in different people.

michael barbaro

Got it.

apoorva mandavilli

But this is basically what scientists have been warning us for months, that apart from the moral argument for vaccinating the world, we’re really rolling the dice when we leave hundreds of millions of people unprotected in parts of the world where the virus can really gain a foothold and really replicate and acquire a lot of new mutations.

michael barbaro

But isn’t it possible that an immunocompromised person anywhere in the world could have given us this variant?

apoorva mandavilli

Absolutely. That’s a really excellent point. This is why we should be vaccinating as much of the world as we can. The more people we have unvaccinated, the more chances that we’ll see another variant that’s dangerous.

michael barbaro

But what if this variant, as many scientists fear, is resistant to vaccines? Does that still hold true?

apoorva mandavilli

It’s not all or nothing. It’s not that if this variant is not as sensitive to vaccines, that the vaccines don’t work at all. It just means that they’ll be a little less effective. But they’ll still probably prevent most people from getting really sick. And the vaccines are really still our best defense against this virus. And that’s even more true for boosters because they really amp up your antibody levels. And they’ll give you an even better chance of fighting off this variant.

michael barbaro

So it sounds like you and the experts you talked to are saying that the answer to preventing variants like omicron and enduring them is not severe travel restrictions. It’s just a lot more vaccinations.

apoorva mandavilli

We know what works. It’s vaccination, it’s masks, it’s social distancing, and probably not travel restrictions.

[music]

michael barbaro

Apoorva, we started this conversation with an acknowledgment that public health officials are telling us to be worried, but not too worried. And I wonder if that’s where your head is right now.

apoorva mandavilli

It really is because we don’t know enough to panic yet. I think this is one of those very frustrating moments when we just have to wait for the answers, and until we know that we should panic, not panic.

michael barbaro

Well, Apoorva, when we get that answer, we will turn to you again. For now, thank you very much.

apoorva mandavilli

Thank you.

michael barbaro

On Monday night, in response to the emergence of Omicron, U.S. officials changed their recommendation for booster shots. Instead of saying that most American adults may get booster shots depending on their individual needs, regulators said that adults should get booster shots to strengthen their immunity.

We’ll be right back.

Here is what else you need to know today. On Monday, the U.S. Secretary of Defense ordered a new high level investigation into a 2019 airstrike in Syria that killed dozens of women and children. The airstrike was deliberately hidden by the U.S military until it was uncovered by The New York Times.

And in testimony on Monday, Elizabeth Holmes, the former Theranos C.E.O. accused of defrauding investors, testified that her ex-business and romantic partner, Sunny Balwani, attempted to manipulate her. The testimony suggested a legal strategy of potentially blaming Balwani for affecting Holmes’s decision making when she ran Theranos and oversaw its collapse.

Today’s episode was produced by Jessica Cheung, Diana Nguyen, and Michael Simon Johnson. It was edited by M.J. Davis Lin and engineered by Chris Wood. Our theme music is by Jim Brunberg and Ben Landsverk of Wonderly.

That’s it for The Daily. I’m Michael Barbaro. See you tomorrow.

How do you say ‘Omicron’?

Image
Credit...The New York Times

Among the many unknowns surrounding the new coronavirus variant called Omicron, named after the 15th letter of the Greek alphabet, one has stood out to many English speakers: How is it pronounced?

There is no single, agreed-on English pronunciation, experts say.

One pronunciation, according to Merriam Webster, is “OH-muh-kraan,” with a stress on the first syllable.

A World Health Organization official, Dr. Maria Van Kerkhove, recently said it that way when announcing that the variant was of concern.

Pronouncing ‘Omicron’

There are several widely accepted ways in English to pronounce “Omicron,” a variant of the coronavirus named after the 15th letter of the Greek alphabet.

In the United States, it is often pronounced “AH-muh-kraan,” Merriam Webster says. Less common are “OH-mee-kraan,” as Prime Minister Boris Johnson of Britain pronounced it, or “OH-my-kraan.”

On the New York Times podcast “The Daily,” Apoorva Mandavilli, who reports on the coronavirus and its variants, said she was going with “AH-muh-kraan.”

“I don’t think it really matters that much, honestly,” she said.

The New Oxford English Dictionary gives a pronunciation that differs from those in Merriam-Webster, according to Dr. Andreas Willi, a comparative linguistics professor at Oxford University. “Namely rather like an English phrase ‘o-MIKE-Ron,’” he said.

The word is a compound from the Greek “o mikron,” meaning “small o.” In classical Greek, the word was pronounced with the second syllable sounding like an English “me,” Dr. Willi said.

Peter Sokolowski, editor at large at Merriam Webster, said that because the Greek word is transliterated for pronunciation into English, sounding much as the word “omnipotent” is different from its Latin “omni-potent” origin, then the “AH-muh-kraan” pronunciation “makes perfect sense.”

But, he added, “There isn’t a wrong answer.”

“The question of British versus American pronunciation of the first syllable isn’t really specific to this particular word,” Dr. Willi said. “Compare the British versus American pronunciation of ‘god.’”

On Tuesday, less than two weeks after Omicron began to dominate everyday conversation, The Associated Press reported that it had appeared on a list of the year’s most mispronounced words compiled by the U.S. Captioning Company, which captions and subtitles events for T.V.

The divergences are to do with the name having been adopted as a loanword and used by English speakers in different places at different times, Dr. Willi said.

“When we speak of ‘Paris’ in English, that is also very different from the ‘proper’ French way of pronouncing the same name,” he said. “But it is hardly wrong in a strict sense.”

The new variant raises alarm in India, which remains vulnerable to another virus wave.

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Credit...Anushree Fadnavis/Reuters

The Omicron variant has stirred alarm in India, which was hit hard this year by a devastating Covid wave fueled in part by another variant.

The new variant has forced the Indian government to review its decision to resume scheduled international flights beginning on Dec. 15. The flights had been stopped when Prime Minister Narendra Modi ordered a nationwide lockdown in March 2020, though some resumed after it established air travel bubbles with several nations.

While experts say it will most likely be weeks before more is known about Omicron’s transmissibility and the severity of the illness it produces, countries have scrambled to introduce new travel restrictions to halt its spread.

On Monday, Mr. Modi held an emergency meeting to review India’s travel rules. The country had only recently resumed issuing tourist visas as it reported the lowest daily cases since the pandemic began. India has also restarted exports of vaccines manufactured domestically.

100,000
200,000
300,000 cases
Feb. 2020
Mar.
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
Jan.
Feb. 2021
Mar.
Apr.
May
Jun.
Jul.
Aug.
Sept.
Oct.
Nov.
Dec.
7–day average
6,768
Source: Center for Systems Science and Engineering (CSSE) at Johns Hopkins University. The daily average is calculated with data that was reported in the last seven days.

Hospitals in New Delhi, the capital, where the earlier wave driven in part by the Delta variant shook the health care system, have been asked to remain on high alert. New Delhi’s top elected official, Arvind Kejriwal, asked Mr. Modi’s government to halt all flights from countries where the new variant had been found.

Instead, the Indian authorities reissued guidelines on Monday for travelers arriving from countries where cases of the Omicron variant have been reported. Passengers arriving from Europe, South Africa and other affected countries now face mandatory testing on arrival. They must quarantine at home for seven days after testing negative, and take another test on the eighth day.

Starting on Wednesday, the authorities said, they will require passengers to produce their travel history over the previous 14 days, along with results of a negative P.C.R. test before boarding any plane flying to India. Government officials said they had designated a hospital to treat and isolate any individual who tests positive for Omicron.

Officials in Mumbai, India’s financial capital, said that over the past 15 days, at least 1,000 travelers have landed in the city from African countries where Omicron has been detected.

The first Omicron case has been detected in the U.S.

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California Officials Address First U.S. Omicron Case

Officials confirmed that the first case of the Omicron variant of the coronavirus in the U.S. was reported in San Francisco, and assured the public that the city was prepared to handle the virus.

“Through a sequencing process at U.C.S.F., has identified the first known case, and has formally made public knowledge of that case as it relates to the Omicron variant. This individual, who is a resident of San Francisco, was fully vaccinated, had recently been in South Africa, began her — rather began to travel back into the United States on the 21st, landed on the 22nd. This individual has not been hospitalized. The individuals that this individual has come into contact with have not tested positive yet, to our knowledge, and we are hopeful of full recovery and expect nothing less, based upon what we’ve learned.” “The evidence that an individual with Omicron, identified by sequencing, actually has mild symptoms, is improving, I think is a testimony to the importance of the vaccinations.” “We knew that Omicron was going to be here. We thought it would — it was already here, we just hadn’t detected it yet. So this is cause for concern. But it is also certainly not a cause for us to panic. We are prepared here in the city for this.”

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Officials confirmed that the first case of the Omicron variant of the coronavirus in the U.S. was reported in San Francisco, and assured the public that the city was prepared to handle the virus.CreditCredit...Mike Kai Chen for The New York Times

The first United States case of the Omicron variant of the coronavirus was reported in California on Wednesday, prompting Biden administration officials to renew their urgent calls for Americans to get fully vaccinated and, if eligible, a booster shot.

The patient, a traveler who returned to California from South Africa on Nov. 22, is in isolation, and aggressive contact tracing is underway, the Centers for Disease Control and Prevention said in a statement, adding that the individual was fully vaccinated and had mild symptoms that were improving. Close contacts of the individuals had tested negative, the agency said.

The World Health Organization has warned that the risk posed by the variant, a new iteration of the coronavirus first detected in southern Africa, is “very high.” More than 20 countries have found the variant so far.

Public health officials around the world have said for days that they expected the new, mutated form of the virus would quickly find its way to the United States despite its imposition of a travel ban on international travelers from eight southern African nations, a move several other countries have also taken.

But confirmation of the variant’s presence nonetheless was a jolt to President Biden’s efforts to make good on his campaign promise to bring the pandemic to a swift and conclusive end. At the White House on Wednesday, Mr. Biden said that “we’re learning more every single day,” and he vowed that the administration would “fight this variant with science and speed, not chaos and confusion.”

Shortly afterward, Dr. Anthony S. Fauci, the president’s top medical adviser, told reporters that confirmation of the new variant in the United States should persuade unvaccinated Americans to get shots immediately.

“We have 60 million people in this country who are not vaccinated who are eligible to be vaccinated,” Dr. Fauci said. “Let’s get them vaccinated. Let’s get the people vaccinated, boosted. Let’s get the children vaccinated.”

Dr. Fauci expressed optimism that the country would eventually emerge from the grip of the pandemic, saying that “there’s no doubt that this will end.” But he also urged caution, saying there was much that health officials still did not know about the new variant.

Omicron carries more than 50 genetic mutations that in theory may make it both more contagious and less vulnerable to the body’s immune defenses than previous variants. More than 30 of the mutations are in the virus’s spike, a protein on its surface. Vaccines train the body’s immune defenses to target and attack the spike.

Available vaccines may still offer substantial protection against severe illness and death following infection with the variant, and federal officials are calling on vaccinated people to get booster shots. The makers of the two most effective vaccines, Pfizer-BioNTech and Moderna, are preparing to reformulate their shots if necessary, but that will take time.

In California, Gov. Gavin Newsom said the infected person had not been hospitalized. The governor said the individual started feeling mild symptoms on Nov. 25, was tested on Sunday and got a positive result on Monday. Within a day, scientists at the University of California, San Francisco, had determined that it was Omicron.

California health officials said the state was increasing coronavirus testing at airports, focusing on arrivals from countries identified by the C.D.C. as potential sources of the virus. Mr. Newsom said the state would not be intensifying public health restrictions, at least in the short term, but that “we should assume that it’s in other states as well.”

“There is no reason to panic, but we should remain vigilant,” he said in a statement.

The health director of the city of San Francisco, Dr. Grant Colfax, added that “we are still learning about the Omicron variant, but we are not back to square one with this disease.”

In California, some 79 percent of residents have gotten at least one dose of the vaccine, after months of campaigning by state officials. Cases and hospitalizations have largely been trending downward since a Delta variant-driven summer rise.

Following news of the variant’s spread in South Africa, countries around the world curtailed air travel to and from southern Africa, measures that officials there described as unduly punitive, especially in light of the fact that Western countries have failed to deliver sufficient vaccines and logistical support to the continent.

Dutch officials said on Tuesday that they identified cases of the variant a week before Friday, when 13 passengers who arrived on flights from South Africa tested positive for it, signaling that the variant was already present.

The W.H.O. says the emergence of Omicron resulted from vaccine inequity in poor countries. Even so, some nations, including Britain and the United States, have renewed efforts to persuade citizens to get vaccine booster shots as quickly as possible.