Mass spectrometry

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"This second, thoroughly revised, updated and enlarged edition provides a straightforward introduction to spectroscopy, showing what it can do and how it does it, together with a clear, integrated and objective account of the wealth of information that may be derived from spectra. It also features new chapters on spectroscopy in nano-dimensions, nano-optics, and polymer analysis. Clearly structured into sixteen sections, this Handbook covers everything from spectroscopy in nanodimensions to medicinal applications, spanning a wide range of the electromagnetic spectrum and the physical processes involved, from nuclear phenomena to molecular rotation processes. In addition, data tables provide a comparison of different methods in a standardized form, allowing readers to save valuable time in the decision process by avoiding wrong turns, and also help in selecting the instrumentation and performing the experiments."

"Since 1949, Analytical Chemistry has published annual reviews. We believe that the publication of authoritative and critical reviews stimulates the dynamic growth of measurement science, and we offer these reviews as a service in support of the professional activities of our readers. Historically, the reviews have offered comprehensive coverage of core areas in the field. However, effective electronic search engines now offer year round access to relevant references and comprehensive literature searches. Consequently, 3 years ago we began to invite and publish critical reviews that address selected cutting edge areas. This year our publisher, the American Chemical Society, is making Analytical Chemistry’s special review issue (January 7, 2014) freely available to the public, accessible to readers without subscriptions." (Editorial by Catherine Fenselau). More review papers on mass spectrometry from ACS Publications.

New Stanford theses using mass spectrometry

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Computational methods for analyzing metabolomics data using metabolic networks [electronic resource]

Weiruo Zhang. 2015
Host-centric proteomics of stool [electronic resource] : monitoring global host responses to the gut microbiota

Joshua Sturgess Lichtman. 2015
Analysis of dynamic signaling systems by mass spectrometry-based measurement of post-translational modifications [electronic resource]

John Lawrence Sanders. 2014
Global quantification of proteostasis regulation [electronic resource]

Izumi Vanessa Hinkson. 2014
Identifying oncogenic attributes and protein binding partners of the NKX2-1 lung cancer oncogene

Books

"Written by the founders of the SPARK program at Stanford University, this book is a practical guide designed for professors, students and clinicians at academic research institutions who are interested in learning more about the drug development process and how to help their discoveries become the novel drugs of the future. Often many potentially transformative basic science discoveries are not pursued because they are deemed "too early" to attract industry interest. There are simple, relatively cost-effective things that academic researchers can do to advance their findings to the point that they can be tested in the clinic or attract more industry interest."

New library materials on mass spectrometry

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Ambient ionization mass spectrometry [electronic resource]

[editors] Marek Domin, Robert Cody. 2015
Analyzing biomolecular interactions by mass spectrometry

edited by Jeroen Kool and Wilfried M.A. Niessen. 2015
Fast liquid chromatography-mass spectrometry methods in food and environmental analysis [electronic resource]

editors, Oscar Nunez ... [et al.].. 2015
Handbook of GC/MS : fundamentals and applications

by Hans-Joachim Hübschmann. 2015
Isotope ratio mass spectrometry of light gas-forming elements

edited by V.S. Sevastyanov. 2015
Mass spectrometry : developmental approaches to answer biological questions

Gwenael Pottiez. 2015
Mass spectrometry for the analysis of pesticide residues and their metabolites

edited by Despina Tsipi, Helen Botitsi, Anastasios Economou. 2015
Mass spectrometry imaging of small molecules

edited by Lin He.. 2015
Mass spectrometry-based metabolomics : a practical guide

edited by Sastia Prama Putri, Eiichiro Fukusaki. 2015
Sector field mass spectrometry for elemental and isotopic analysis [electronic resource]

[editors]: Thomas Prohaska, Johanna Irrgeher, Andreas Zitek, Norbert Jakubowski. 2015

Mass spectrometry subjects in SearchWorks

Selected textbooks

This book emphasizes the point that the most important part of learning how to interpret unknown mass spectra is to practice interpreting mass spectra. The book aims at correlating ion dissociation mecanisms on a much broader scale, with the emphasis on basic attributes such as ionization energies, proton affinities and bond dissociation energies. The authors also tried to show how these mechanisms are applicable to the unimolecular dissociations of ions formed by any ionization method, including the new methods for obtaining mass spectra of large molecules.

Databases

Databases with spectral peak searching

This database contains three collections of MS data: (1) Wiley Registry 9th – 670,000 classical EI spectra, 570,000 searchable structures (2) NIST/EPA/NIH 2011 – 240,000 classical EI spectra, 210,000 searchable structures (3) Wiley MS – 100,000 classical EI spectra, 100,000 searchable structures It is the largest mass spectral library that is commercially available. Coverage includes pharmaceuticals, illegal drugs, poisons, pesticides,steroids, natural products, chemical warfare agents,and environmental pollutants. Search help: Getting Started (from Wiley) and SurfSpec Flash Movies (from UK's Chemical Database Service). (Structure searching)

Property Databases

The NIST Chemistry WebBook contains: Thermochemical data for over 7000 organic and small inorganic compounds; thermochemistry data for over 8000 reactions; IR spectra for over 16,000 compounds; mass spectra for over 33,000 compounds; UV/Vis spectra for over 1600 compounds; electronic and vibrational spectra for over 5000 compounds; constants of diatomic molecules(spectroscopic data) for over 600 compounds; ion energetics data for over 16,000 compounds; thermophysical property data for 74 fluids.

Bibliographic Databases

SciFinder is the most comprehensive database for coverage of chemistry & chemical engineering. It has the world's largest collection of organic and inorganic substance information. The web version of SciFinder provides integrated access to CAPlus, CAS Registry, CASREACT, CHEMLIST, and CHEMCATS which are produced by Chemical Abstracts Service, and to MEDLINE which is produced by the U.S. National Library of Medicine. Sources covered in SciFinder include 10,000 journals, patents from 63 patent authorities, book chapters, conference proceedings, dissertations, evaluated reference works, technical reports, as well as book reviews and biographical information. (Structure and Reaction Searching)

Updated daily, Current Contents Connect is a multidisciplinary current awareness web resource providing access to complete bibliographic information of the world's leading scholarly journals. It provides complete tables of contents and bibliographic information, including abstracts, from about 8,000 journals, 2,000 books, and 7,000 scholarly web sites. It includes pre-published electronic journal articles and links to the full text. Database coverage: 1998 to the present. For more information, please see Fact sheet, Quick Reference Card, and recorded training.

Search over 12,000 core journals across the sciences, social sciences, and arts and humanities to find the high quality research. Move backward/forward in time using cited/citing reference identified by researchers. Updated weekly, includes Science Citation Index Expanded (1899-present), Social Sciences Citation Index (1898-present), Arts & Humanities Citation Index (1975-present), Conference Proceedings Citation Index- Science (1990-present), Conference Proceedings Citation Index- Social Science & Humanities (1990-present), Book Citation Index (2005-present), Index Chemicus (1993-present), and Current Chemical Reactions (1985-present; also includes Institut National de la Propriete Industrielle structure data back to 1840)). (Structure searching)

Dictionaries

The Compendium is popularly referred to as the "Gold Book", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC "Colour Books" on chemical nomenclature, terminology, symbols and units, and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.

Encyclopedias

The Encyclopedia is the most comprehensive analytical chemistry reference available, covering all aspects from theory and instrumentation through to applications and techniques. The chemistry and techniques are described as performed in the laboratory, in the field, or by remote sensing. The level of detail is similar to that of a laboratory protocol and, together with the cited references, will support the analysis of complex inorganic, organic and biological structures by researchers.

Handbooks

Due to its enormous sensitivity and ease of use, mass spectrometry has grown into the analytical tool of choice in most industries and areas of research. This unique reference provides an extensive library of methods used in mass spectrometry, covering applications of mass spectrometry in fields as diverse as drug discovery, environmental science, forensic science, clinical analysis, polymers, oil composition, doping, cellular research, semiconductor, ceramics, metals and alloys, and homeland security. The book provides the reader with a protocol for the technique described (including sampling methods) and explains why to use a particular method and not others.

Updated and expanded, the classic guide to GC/MS helps chromatographers quickly learn to use this technique for analyzing and identifying compounds. After explaining the fundamentals, it discusses optimizing, tuning, using, and maintaining GC/MS equipment; explores advances in miniaturized and field-portable GC/MS systems and microfluidic components; and more. Complete with a CD-ROM, it covers applications in the environmental laboratory and in forensics, toxicology, and space science. This is the premier resource for professionals in those fields and for students.

Consolidates the information LC-MS bioanalytical scientists need to analyze small molecules and macromolecules. This book thoroughly examines fundamentals of LC-MS bioanalysis in drug discovery, drug development, and therapeutic drug monitoring; the current understanding of regulations governing LC-MS bioanalysis; best practices and detailed technical instructions for LC-MS bioanalysis method development, validation, and stability assessment of analyte(s) of interest; and experimental guidelines and protocols for quantitative LC-MS bioanalysis of challenging molecules, including pro-drugs, acyl glucuronides, N-oxides, reactive compounds, and photosensitive and autooxidative compound.

This authoritative book on MALDI MS (Matrix-Assisted Laser Desorption-Ionization-Mass Spectrometry), now finally available in its second edition and edited by one of its inventors, gives an in-depth description of the many different applications, along with a detailed discussion of the technology itself.Thoroughly updated and expanded, with contributions from key players in the field, this unique book provides a comprehensive overview of MALDI MS along with its possibilities and limitations. The initial chapters deal with the technology and the instrumental setup, followed by chapters on the use of MALDI MS in protein research (including proteomics.

Journals

International journal of mass spectrometry

Journal of the American Society for Mass Spectrometry

Journal of Mass Spectrometry (JMS)

Mass Spectrometry Reviews

Rapid communications in mass spectrometry

Mass spectrometry periodicals at Stanford

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Protocols & methods

Springer Protocols is the largest subscription-based electronic database of reproducible laboratory protocols in the Life and Biomedical Sciences. Compiling protocols from Humana’s successful book series Methods in Molecular Biology, Methods in Molecular Medicine, Methods in Biotechnology, Methods in Pharmacology and Toxicology, and Neuromethods, as well as from a vast number of Laboratory Handbooks, such as The Biomethods Handbook, The Proteomics Handbook, and the Springer Laboratory Manuals.

Mass spectrometry > methods

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Mass spectrometry imaging of small molecules

edited by Lin He.. 2015
Advancements of mass spectrometry in biomedical research

Alisa G. Woods, Costel C. Darie, editors. 2014
Mass spectrometry in metabolomics : methods and protocols

edited by Daniel Raftery. 2014
Mass spectrometry data analysis in proteomics

edited by Rune Matthiesen. 2013
Mass spectrometry of glycoproteins : methods and protocols

edited by Jennifer J. Kohler, Steven M. Patrie. 2013

Software

Prediction Software on the Web

Site-licensed by Swain Library

Computer clusters

BrowZine is an app that lets you browse, read and monitor thousands of scholarly journals available from the Stanford University Libraries. It works on these types of devices: all iPads, iPhones and iPod Touches with iOS v7.x+, Android Tablets and Smartphones with OS v4.1+ and Kindle Fire HD Tablets. You can browse titles by subject to easily find journals of interest, create a personal bookshelf of favorite journals, be alerted when a new issue of a journal is published, save articles in your personal library. BrowZine can easily be synced up with Box.com, Mendeley, Zotero, and other services to help keep all of your information together in one place. For installation details, please see this blog post: BrowZine table App Now Available from the Stanford Libraries

Software, apps, and widgets

Websites

Links to resources

Analytical Sciences Digital Library

Featured resource

Stanford Labs

The Vincent Coates Foundation Mass Spectrometry Laboratory is a mass spectrometry & proteomics facility as a shared core resource. It is a Bio-X core facility and is also partially supported as the Proteomics Shared Resource of the Stanford Cancer Center. Beyond making available state-of-the-art, user-friendly facilities and services, the laboratory enables education, methods development, and new applications development, designed to meet the rapidly evolving needs of researchers. Due to the essential information that mass spectrometry provides to researchers in the fields of the physical and life sciences, medicine, and engineering, the laboratory serves as an “intellectual watering hole” at the crossroads of diverse disciplines.

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