Publications

1: Dinneny JR. Traversing organizational scales in plant salt-stress responses.
Curr Opin Plant Biol. 2014 Nov 15;23C:70-75. doi: 10.1016/j.pbi.2014.10.009.
[Epub ahead of print] Review. PubMed PMID: 25449729.

2: Duan L, Sebastian J, Dinneny JR. Salt-stress regulation of root system growth
and architecture in Arabidopsis seedlings. Methods Mol Biol. 2015;1242:105-22.
doi: 10.1007/978-1-4939-1902-4_10. PubMed PMID: 25408448.

3: Velasquez SM, Dinneny JR, Estevez JM. Live imaging of root hairs. Methods Mol
Biol. 2015;1242:59-66. doi: 10.1007/978-1-4939-1902-4_5. PubMed PMID: 25408443.

4: Robbins NE 2nd, Trontin C, Duan L, Dinneny JR. Beyond the barrier:
communication in the root through the endodermis. Plant Physiol. 2014
Oct;166(2):551-9. doi: 10.1104/pp.114.244871. Epub 2014 Aug 14. PubMed PMID:
25125504; PubMed Central PMCID: PMC4213087.

5: Bao Y, Aggarwal P, Robbins NE 2nd, Sturrock CJ, Thompson MC, Tan HQ, Tham C,
Duan L, Rodriguez PL, Vernoux T, Mooney SJ, Bennett MJ, Dinneny JR. Plant roots
use a patterning mechanism to position lateral root branches toward available
water. Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9319-24. doi:
10.1073/pnas.1400966111. Epub 2014 Jun 9. PubMed PMID: 24927545; PubMed Central
PMCID: PMC4078807.

6: Sebastian J, Wong MK, Tang E, Dinneny JR. Methods to promote germination of
dormant Setaria viridis seeds. PLoS One. 2014 Apr 18;9(4):e95109. doi:
10.1371/journal.pone.0095109. eCollection 2014. PubMed PMID: 24748008; PubMed
Central PMCID: PMC3991590.

7: Wang PL, Bao Y, Yee MC, Barrett SP, Hogan GJ, Olsen MN, Dinneny JR, Brown PO,
Salzman J. Circular RNA is expressed across the eukaryotic tree of life. PLoS
One. 2014 Mar 7;9(6):e90859. doi: 10.1371/journal.pone.0090859. eCollection 2014.

8: Dinneny JR. A gateway with a guard: how the endodermis regulates growth
through hormone signaling. Plant Sci. 2014 Jan;214:14-9. doi:
10.1016/j.plantsci.2013.09.009. Epub 2013 Sep 26. Review. PubMed PMID: 24268159.

9: Emami S, Yee MC, Dinneny JR. A robust family of Golden Gate Agrobacterium
vectors for plant synthetic biology. Front Plant Sci. 2013 Sep 2;4:339. doi:
10.3389/fpls.2013.00339. eCollection 2013. PubMed PMID: 24032037; PubMed Central
PMCID: PMC3759027.

10: Geng Y, Wu R, Wee CW, Xie F, Wei X, Chan PM, Tham C, Duan L, Dinneny JR. A
spatio-temporal understanding of growth regulation during the salt stress
response in Arabidopsis. Plant Cell. 2013 Jun;25(6):2132-54. doi:
10.1105/tpc.113.112896. Epub 2013 Jun 28. PubMed PMID: 23898029; PubMed Central
PMCID: PMC3723617.

11: Duan L, Dietrich D, Ng CH, Chan PM, Bhalerao R, Bennett MJ, Dinneny JR.
Endodermal ABA signaling promotes lateral root quiescence during salt stress in
Arabidopsis seedlings. Plant Cell. 2013 Jan;25(1):324-41. doi:
10.1105/tpc.112.107227. Epub 2013 Jan 22. PubMed PMID: 23341337; PubMed Central
PMCID: PMC3584545.

12: Wee CW, Dinneny JR. Tools for high-spatial and temporal-resolution analysis
of environmental responses in plants. Biotechnol Lett. 2010 Oct;32(10):1361-71.
doi: 10.1007/s10529-010-0307-8. Epub 2010 May 26. Review. PubMed PMID: 20502944.

13: Dinneny JR. Analysis of the salt-stress response at cell-type resolution.
Plant Cell Environ. 2010 Apr;33(4):543-51. doi: 10.1111/j.1365-3040.2009.02055.x.
Epub 2009 Oct 14. Review. PubMed PMID: 19843253.

14: Orlando DA, Brady SM, Koch JD, Dinneny JR, Benfey PN. Manipulating
large-scale Arabidopsis microarray expression data: identifying dominant
expression patterns and biological process enrichment. Methods Mol Biol.
2009;553:57-77. doi: 10.1007/978-1-60327-563-7_4. Review. PubMed PMID: 19588101;
PubMed Central PMCID: PMC4164220.

15: Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM,
Schiefelbein J, Benfey PN. Cell identity mediates the response of Arabidopsis
roots to abiotic stress. Science. 2008 May 16;320(5878):942-5. doi:
10.1126/science.1153795. Epub 2008 Apr 24. PubMed PMID: 18436742.

16: Dinneny JR, Benfey PN. Plant stem cell niches: standing the test of time.
Cell. 2008 Feb 22;132(4):553-7. doi: 10.1016/j.cell.2008.02.001. PubMed PMID:
18295573.

17: Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory
J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause
differential responses to light. Proc Natl Acad Sci U S A. 2008 Feb
26;105(8):3157-62. doi: 10.1073/pnas.0712174105. Epub 2008 Feb 14.

18: Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U,
Benfey PN. A high-resolution root spatiotemporal map reveals dominant expression
patterns. Science. 2007 Nov 2;318(5851):801-6. PubMed PMID: 17975066.

19: Dinneny JR, Weigel D, Yanofsky MF. NUBBIN and JAGGED define stamen and carpel
shape in Arabidopsis. Development. 2006 May;133(9):1645-55. Epub 2006 Mar 22.

20: Dinneny JR, Benfey PN. Stem cell research goes underground: the
RETINOBLASTOMA-RELATED gene in root development. Cell. 2005 Dec 29;123(7):1180-2.
Review. PubMed PMID: 16377557.

21: Dinneny JR, Weigel D, Yanofsky MF. A genetic framework for fruit patterning
in Arabidopsis thaliana. Development. 2005 Nov;132(21):4687-96. Epub 2005 Sep 28.
PubMed PMID: 16192305.

22: Dinneny JR, Yanofsky MF. Drawing lines and borders: how the dehiscent fruit
of Arabidopsis is patterned. Bioessays. 2005 Jan;27(1):42-9. Review. PubMed PMID:
15612035.

23: Dinneny JR, Yanofsky MF. Floral development: an ABC gene chips in downstream.
Curr Biol. 2004 Oct 5;14(19):R840-1. Review. PubMed PMID: 15458662.

24: Dinneny JR, Yanofsky MF. Vascular patterning: xylem or phloem? Curr Biol.
2004 Feb 3;14(3):R112-4. Review. PubMed PMID: 14986642.

25: Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. The role of JAGGED
in shaping lateral organs. Development. 2004 Mar;131(5):1101-10. PubMed PMID:
14973282.

26: Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D.
Modes of intercellular transcription factor movement in the Arabidopsis apex.
Development. 2003 Aug;130(16):3735-45. PubMed PMID: 12835390.

27: Kiyosue T, Ohad N, Yadegari R, Hannon M, Dinneny J, Wells D, Katz A,
Margossian L, Harada JJ, Goldberg RB, Fischer RL. Control of
fertilization-independent endosperm development by the MEDEA polycomb gene in
Arabidopsis. Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4186-91. PubMed PMID:
10097185; PubMed Central PMCID: PMC22442.